miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 30407 0.66 0.35773
Target:  5'- gGCCaGCCCggcGGGCgCAGcGGCCCuCUGc -3'
miRNA:   3'- -CGG-CGGGagcCCCGgGUC-CCGGG-GAU- -5'
28992 5' -69.1 NC_006146.1 + 128463 0.66 0.35773
Target:  5'- gGCCGCCgC-CGuGGGCCUcacguaguGGGCCCa-- -3'
miRNA:   3'- -CGGCGG-GaGC-CCCGGGu-------CCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 167389 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28992 5' -69.1 NC_006146.1 + 168321 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28992 5' -69.1 NC_006146.1 + 131109 0.66 0.35773
Target:  5'- cGCCGUCCcagaagcCGGGaGCUCcGGGCCCa-- -3'
miRNA:   3'- -CGGCGGGa------GCCC-CGGGuCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 169253 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28992 5' -69.1 NC_006146.1 + 170185 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28992 5' -69.1 NC_006146.1 + 39020 0.66 0.35773
Target:  5'- aGCUGCCC-Ca-GGCUCAGGGCCUg-- -3'
miRNA:   3'- -CGGCGGGaGccCCGGGUCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 109343 0.66 0.357003
Target:  5'- cGUgGCCCUCGGGGUggggaauagacagCgAGGGCguccCCCg- -3'
miRNA:   3'- -CGgCGGGAGCCCCG-------------GgUCCCG----GGGau -5'
28992 5' -69.1 NC_006146.1 + 25417 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 123150 0.66 0.350512
Target:  5'- gGCCGCUCUCcGucCCCAGGgccaGCCCCUc -3'
miRNA:   3'- -CGGCGGGAGcCccGGGUCC----CGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 19261 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 13130 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 95524 0.66 0.350512
Target:  5'- --aGCUgUCGGGuGCggcgccuggCCAGGGUCCCUAu -3'
miRNA:   3'- cggCGGgAGCCC-CG---------GGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 28495 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 22339 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 57543 0.66 0.350512
Target:  5'- aGCCuCCCUCaccgacaCCCGGGGCCCCg- -3'
miRNA:   3'- -CGGcGGGAGcccc---GGGUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 160635 0.66 0.350512
Target:  5'- cGCCGCCUUCgugauGGGGgCCAccGCCCaCUAc -3'
miRNA:   3'- -CGGCGGGAG-----CCCCgGGUccCGGG-GAU- -5'
28992 5' -69.1 NC_006146.1 + 126609 0.66 0.350512
Target:  5'- cUCGCCauCUCGuucgcggagaGGGCgCAGaGGCCCCUGg -3'
miRNA:   3'- cGGCGG--GAGC----------CCCGgGUC-CCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 28519 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.