Results 41 - 60 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28992 | 5' | -69.1 | NC_006146.1 | + | 28519 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 57543 | 0.66 | 0.350512 |
Target: 5'- aGCCuCCCUCaccgacaCCCGGGGCCCCg- -3' miRNA: 3'- -CGGcGGGAGcccc---GGGUCCCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 126609 | 0.66 | 0.350512 |
Target: 5'- cUCGCCauCUCGuucgcggagaGGGCgCAGaGGCCCCUGg -3' miRNA: 3'- cGGCGG--GAGC----------CCCGgGUC-CCGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 160635 | 0.66 | 0.350512 |
Target: 5'- cGCCGCCUUCgugauGGGGgCCAccGCCCaCUAc -3' miRNA: 3'- -CGGCGGGAG-----CCCCgGGUccCGGG-GAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 164453 | 0.66 | 0.350512 |
Target: 5'- gGuuGUUgUUGGGGCCCcauggaccccAGGGCCCa-- -3' miRNA: 3'- -CggCGGgAGCCCCGGG----------UCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 13130 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 25441 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 13105 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 167703 | 0.66 | 0.346232 |
Target: 5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3' miRNA: 3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 169568 | 0.66 | 0.346232 |
Target: 5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3' miRNA: 3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 168069 | 0.66 | 0.343399 |
Target: 5'- gGCCGCCC-CGGGGCUC----CCCCg- -3' miRNA: 3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 169001 | 0.66 | 0.343399 |
Target: 5'- gGCCGCCC-CGGGGCUC----CCCCg- -3' miRNA: 3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 169933 | 0.66 | 0.343399 |
Target: 5'- gGCCGCCC-CGGGGCUC----CCCCg- -3' miRNA: 3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 44905 | 0.66 | 0.343399 |
Target: 5'- gGCCGgCCagCGGGGgCCAcGGCCaCCg- -3' miRNA: 3'- -CGGCgGGa-GCCCCgGGUcCCGG-GGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 48263 | 0.66 | 0.343398 |
Target: 5'- cGCCGCCgUCcuGGCgCgaaagAGGGCCCCg- -3' miRNA: 3'- -CGGCGGgAGccCCGgG-----UCCCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 102867 | 0.66 | 0.343398 |
Target: 5'- aGCCGCCaccuggUCGuGGCC--GGGCCCCa- -3' miRNA: 3'- -CGGCGGg-----AGCcCCGGguCCCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 42016 | 0.66 | 0.342693 |
Target: 5'- uGCCGagcuacuCCCUCuGGGCCC-GGGCUCa-- -3' miRNA: 3'- -CGGC-------GGGAGcCCCGGGuCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 168636 | 0.66 | 0.341285 |
Target: 5'- gGCUuCCC-CGGGGCCCgagcgcgcgucgguGGGGCCUg-- -3' miRNA: 3'- -CGGcGGGaGCCCCGGG--------------UCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 168829 | 0.66 | 0.33639 |
Target: 5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3' miRNA: 3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 169761 | 0.66 | 0.33639 |
Target: 5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3' miRNA: 3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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