miRNA display CGI


Results 61 - 80 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 49992 0.66 0.33639
Target:  5'- gGCCGCCacaUUgugcacgaaggGGGGCaCCaccgaagcagaaGGGGCCCCg- -3'
miRNA:   3'- -CGGCGGg--AG-----------CCCCG-GG------------UCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169761 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 54441 0.66 0.33639
Target:  5'- cCCGCCUgacCGGGgccGCCCAGaGGCUCUg- -3'
miRNA:   3'- cGGCGGGa--GCCC---CGGGUC-CCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 33405 0.67 0.329486
Target:  5'- gGCUGCCC-CGGaGCaCCAGGaGCaCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCcCG-GGUCC-CG-GGGau -5'
28992 5' -69.1 NC_006146.1 + 169734 0.67 0.329486
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170665 0.67 0.329486
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 167870 0.67 0.329486
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 168802 0.67 0.329486
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 155853 0.67 0.329485
Target:  5'- uGCC-UCCUCGcaGGCCCGGcGGgCCCUGg -3'
miRNA:   3'- -CGGcGGGAGCc-CCGGGUC-CCgGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 168816 0.67 0.322687
Target:  5'- --aGCCC-CGGggcGGCCCGGGGaCCCUc -3'
miRNA:   3'- cggCGGGaGCC---CCGGGUCCCgGGGAu -5'
28992 5' -69.1 NC_006146.1 + 45245 0.67 0.322687
Target:  5'- aGCCGCCCcuaGGGaGCC---GGCCCCg- -3'
miRNA:   3'- -CGGCGGGag-CCC-CGGgucCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 167884 0.67 0.322687
Target:  5'- --aGCCC-CGGggcGGCCCGGGGaCCCUc -3'
miRNA:   3'- cggCGGGaGCC---CCGGGUCCCgGGGAu -5'
28992 5' -69.1 NC_006146.1 + 167246 0.67 0.322687
Target:  5'- gGCCaGuCCCUgGaugucggggaGGGCCCGGGGCCgCg- -3'
miRNA:   3'- -CGG-C-GGGAgC----------CCCGGGUCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 169748 0.67 0.322687
Target:  5'- --aGCCC-CGGggcGGCCCGGGGaCCCUc -3'
miRNA:   3'- cggCGGGaGCC---CCGGGUCCCgGGGAu -5'
28992 5' -69.1 NC_006146.1 + 168178 0.67 0.322687
Target:  5'- gGCCaGuCCCUgGaugucggggaGGGCCCGGGGCCgCg- -3'
miRNA:   3'- -CGG-C-GGGAgC----------CCCGGGUCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 169110 0.67 0.322687
Target:  5'- gGCCaGuCCCUgGaugucggggaGGGCCCGGGGCCgCg- -3'
miRNA:   3'- -CGG-C-GGGAgC----------CCCGGGUCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 170042 0.67 0.322687
Target:  5'- gGCCaGuCCCUgGaugucggggaGGGCCCGGGGCCgCg- -3'
miRNA:   3'- -CGG-C-GGGAgC----------CCCGGGUCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 39278 0.67 0.320668
Target:  5'- aUgGCCCUggccuuccccagacCGGaGGCCggcgaccauucaCAGGGCCCCUGc -3'
miRNA:   3'- cGgCGGGA--------------GCC-CCGG------------GUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 98069 0.67 0.315993
Target:  5'- gGCUcagGCCCUCGuuccacGGCCCGGGGucggcggcCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGCc-----CCGGGUCCC--------GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 126551 0.67 0.315993
Target:  5'- uCUGCCCcCGGGGCCCGcGGUCacggaCUAu -3'
miRNA:   3'- cGGCGGGaGCCCCGGGUcCCGGg----GAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.