miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 5160 0.68 0.260462
Target:  5'- gGCCGCCa--GGaGGCUCucguGGCCCCUGg -3'
miRNA:   3'- -CGGCGGgagCC-CCGGGuc--CCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 5235 0.76 0.071289
Target:  5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5'
28992 5' -69.1 NC_006146.1 + 12457 0.67 0.302921
Target:  5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 12669 0.67 0.296544
Target:  5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3'
miRNA:   3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 13105 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 13130 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 13248 0.71 0.169427
Target:  5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 13370 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 13580 0.8 0.038184
Target:  5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3'
miRNA:   3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 13825 0.67 0.302922
Target:  5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3'
miRNA:   3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5'
28992 5' -69.1 NC_006146.1 + 13938 0.69 0.243804
Target:  5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3'
miRNA:   3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 15228 0.69 0.243804
Target:  5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3'
miRNA:   3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 15536 0.67 0.302921
Target:  5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 15748 0.67 0.296544
Target:  5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3'
miRNA:   3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 16183 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 16208 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 16326 0.71 0.169427
Target:  5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 16448 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 16658 0.8 0.038184
Target:  5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3'
miRNA:   3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 16903 0.67 0.302922
Target:  5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3'
miRNA:   3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.