Results 21 - 40 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28992 | 5' | -69.1 | NC_006146.1 | + | 17016 | 0.69 | 0.243804 |
Target: 5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3' miRNA: 3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 18306 | 0.69 | 0.243804 |
Target: 5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3' miRNA: 3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 18614 | 0.67 | 0.302921 |
Target: 5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3' miRNA: 3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 18826 | 0.67 | 0.296544 |
Target: 5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3' miRNA: 3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 19261 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 19286 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 19406 | 0.7 | 0.199099 |
Target: 5'- gGCgGCgCCUUGGGGCCCGGaGUCUCg- -3' miRNA: 3'- -CGgCG-GGAGCCCCGGGUCcCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 19526 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 19736 | 0.8 | 0.038184 |
Target: 5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3' miRNA: 3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 19981 | 0.67 | 0.302922 |
Target: 5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3' miRNA: 3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 20094 | 0.69 | 0.243804 |
Target: 5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3' miRNA: 3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 21384 | 0.69 | 0.243804 |
Target: 5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3' miRNA: 3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 21692 | 0.67 | 0.302921 |
Target: 5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3' miRNA: 3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 21904 | 0.67 | 0.296544 |
Target: 5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3' miRNA: 3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 22339 | 0.66 | 0.350512 |
Target: 5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3' miRNA: 3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 22364 | 0.66 | 0.350512 |
Target: 5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3' miRNA: 3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 22481 | 0.71 | 0.169427 |
Target: 5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3' miRNA: 3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 22604 | 1.07 | 0.000303 |
Target: 5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3' miRNA: 3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 22814 | 0.8 | 0.038184 |
Target: 5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3' miRNA: 3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5' |
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28992 | 5' | -69.1 | NC_006146.1 | + | 23059 | 0.67 | 0.302922 |
Target: 5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3' miRNA: 3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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