miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 23172 0.69 0.243804
Target:  5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3'
miRNA:   3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 24461 0.69 0.243804
Target:  5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3'
miRNA:   3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 24770 0.67 0.302921
Target:  5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 24916 0.68 0.265637
Target:  5'- cCCgGCCCUCGaGGccucacaGCCCAGGccagGCCCCUu -3'
miRNA:   3'- cGG-CGGGAGC-CC-------CGGGUCC----CGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 24982 0.67 0.296544
Target:  5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3'
miRNA:   3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 25417 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 25441 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 25559 0.71 0.169427
Target:  5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 25682 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 25892 0.8 0.038184
Target:  5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3'
miRNA:   3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 26137 0.67 0.302922
Target:  5'- gGCUGCU---GGGGaCCAGGGCCuCCUGg -3'
miRNA:   3'- -CGGCGGgagCCCCgGGUCCCGG-GGAU- -5'
28992 5' -69.1 NC_006146.1 + 26250 0.69 0.243804
Target:  5'- gGCgGCUCUCccGGGCugCCGGGGUCCCUc -3'
miRNA:   3'- -CGgCGGGAGc-CCCG--GGUCCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 27539 0.69 0.243804
Target:  5'- cCCGagaCCUgGGGGCCC-GGGCCUg-- -3'
miRNA:   3'- cGGCg--GGAgCCCCGGGuCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 27848 0.67 0.302921
Target:  5'- cGCCgggGCCUUUcaGGCCCucGGGCCCCUc -3'
miRNA:   3'- -CGG---CGGGAGccCCGGGu-CCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 28060 0.67 0.296544
Target:  5'- aGCCggaGUCCagaGGGGCCCgAGGGCCUg-- -3'
miRNA:   3'- -CGG---CGGGag-CCCCGGG-UCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 28495 0.66 0.350512
Target:  5'- gGUCGCCaggCGGGGUCC--GGCCUCUc -3'
miRNA:   3'- -CGGCGGga-GCCCCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 28519 0.66 0.350512
Target:  5'- gGCCaCCgggCGGGG-CCAGGGCCuCCa- -3'
miRNA:   3'- -CGGcGGga-GCCCCgGGUCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 28637 0.71 0.169427
Target:  5'- gGCCG-CCUUGGGGCCCGGaGUCUCg- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGGUCcCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 28760 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 28970 0.8 0.038184
Target:  5'- uCCGUCCUCuggacuaGGGGCCCuGGGCCCCg- -3'
miRNA:   3'- cGGCGGGAG-------CCCCGGGuCCCGGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.