miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 170696 0.72 0.143775
Target:  5'- cGCCGCgCgCUgGGGGUCCGGGGaagccCCCCg- -3'
miRNA:   3'- -CGGCG-G-GAgCCCCGGGUCCC-----GGGGau -5'
28992 5' -69.1 NC_006146.1 + 170665 0.67 0.329486
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170620 0.66 0.372475
Target:  5'- cCCGCCCcCGGGucuuCCCGGGcucCCCCUc -3'
miRNA:   3'- cGGCGGGaGCCCc---GGGUCCc--GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 170391 0.7 0.180373
Target:  5'- gGCCGggccucCCCUgGGGGCCUcgggggcggaggggGGGGUCCCg- -3'
miRNA:   3'- -CGGC------GGGAgCCCCGGG--------------UCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170371 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170201 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 170185 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28992 5' -69.1 NC_006146.1 + 170042 0.67 0.322687
Target:  5'- gGCCaGuCCCUgGaugucggggaGGGCCCGGGGCCgCg- -3'
miRNA:   3'- -CGG-C-GGGAgC----------CCCGGGUCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 169933 0.66 0.343399
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169761 0.66 0.33639
Target:  5'- -gCGCgCUCGGGcCCCGGGgaaGCCCCc- -3'
miRNA:   3'- cgGCGgGAGCCCcGGGUCC---CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169748 0.67 0.322687
Target:  5'- --aGCCC-CGGggcGGCCCGGGGaCCCUc -3'
miRNA:   3'- cggCGGGaGCC---CCGGGUCCCgGGGAu -5'
28992 5' -69.1 NC_006146.1 + 169734 0.67 0.329486
Target:  5'- cGCuCGcCCCUCGGGucgcgggacacGCCCccGGGUCCCc- -3'
miRNA:   3'- -CG-GC-GGGAGCCC-----------CGGGu-CCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169688 0.66 0.372475
Target:  5'- cCCGCCCcCGGGucuuCCCGGGcucCCCCUc -3'
miRNA:   3'- cGGCGGGaGCCCc---GGGUCCc--GGGGAu -5'
28992 5' -69.1 NC_006146.1 + 169568 0.66 0.346232
Target:  5'- gGCUuCCC-CGGGGCCCgagcgcgcgucggguGGGGCCUg-- -3'
miRNA:   3'- -CGGcGGGaGCCCCGGG---------------UCCCGGGgau -5'
28992 5' -69.1 NC_006146.1 + 169460 0.7 0.180373
Target:  5'- gGCCGggccucCCCUgGGGGCCUcgggggcggaggggGGGGUCCCg- -3'
miRNA:   3'- -CGGC------GGGAgCCCCGGG--------------UCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169440 0.73 0.118837
Target:  5'- cCCGCCCUCGGGaGCCCccucaGCCCCc- -3'
miRNA:   3'- cGGCGGGAGCCC-CGGGucc--CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169270 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 169253 0.66 0.35773
Target:  5'- cGCCGCCCccCGGGaCCCcGGGCgcgcgccggccuCCCg- -3'
miRNA:   3'- -CGGCGGGa-GCCCcGGGuCCCG------------GGGau -5'
28992 5' -69.1 NC_006146.1 + 169110 0.67 0.322687
Target:  5'- gGCCaGuCCCUgGaugucggggaGGGCCCGGGGCCgCg- -3'
miRNA:   3'- -CGG-C-GGGAgC----------CCCGGGUCCCGGgGau -5'
28992 5' -69.1 NC_006146.1 + 169001 0.66 0.343399
Target:  5'- gGCCGCCC-CGGGGCUC----CCCCg- -3'
miRNA:   3'- -CGGCGGGaGCCCCGGGucccGGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.