miRNA display CGI


Results 1 - 20 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 13370 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135999 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 136185 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 170201 0.66 0.372475
Target:  5'- gGCCgggGCCUggcgGGGGCCagcgCGGGGUCCCg- -3'
miRNA:   3'- -CGG---CGGGag--CCCCGG----GUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 25682 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 28760 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 5235 0.76 0.071289
Target:  5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5'
28992 5' -69.1 NC_006146.1 + 135721 0.76 0.073066
Target:  5'- cGCUGCCCguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135349 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135906 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135535 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135256 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 16448 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135628 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 19526 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135163 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135813 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 136092 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 22604 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 149935 0.76 0.067859
Target:  5'- aGCCuGCCCUCGGGGUUgaGGGGCgCCCa- -3'
miRNA:   3'- -CGG-CGGGAGCCCCGGg-UCCCG-GGGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.