miRNA display CGI


Results 41 - 60 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28992 5' -69.1 NC_006146.1 + 137486 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135999 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 19526 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 137393 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 16448 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 108961 0.69 0.22248
Target:  5'- aCCGUCC-CGuggaccaGGGCCCuGGaGCCCCUGa -3'
miRNA:   3'- cGGCGGGaGC-------CCCGGGuCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 25682 1.07 0.000303
Target:  5'- aGCCGCCCUCGGGGCCCAGGGCCCCUAg -3'
miRNA:   3'- -CGGCGGGAGCCCCGGGUCCCGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 155780 0.7 0.185864
Target:  5'- cGCCGCagaagagccgCUCGGuGGCCCugGGGGCCaCCg- -3'
miRNA:   3'- -CGGCGg---------GAGCC-CCGGG--UCCCGG-GGau -5'
28992 5' -69.1 NC_006146.1 + 169460 0.7 0.180373
Target:  5'- gGCCGggccucCCCUgGGGGCCUcgggggcggaggggGGGGUCCCg- -3'
miRNA:   3'- -CGGC------GGGAgCCCCGGG--------------UCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 33430 0.71 0.157966
Target:  5'- cGCCGCCgCUCGGu-CCUGGGGCUCCg- -3'
miRNA:   3'- -CGGCGG-GAGCCccGGGUCCCGGGGau -5'
28992 5' -69.1 NC_006146.1 + 33184 0.72 0.137125
Target:  5'- cGCCGCCgCUCGguccuGGGCCUccGGGuGCUCCUGg -3'
miRNA:   3'- -CGGCGG-GAGC-----CCCGGG--UCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 94503 0.73 0.118837
Target:  5'- cGCCGCCgUCGGcGCCCccGGUCCCUc -3'
miRNA:   3'- -CGGCGGgAGCCcCGGGucCCGGGGAu -5'
28992 5' -69.1 NC_006146.1 + 157770 0.75 0.084651
Target:  5'- uGCUcUCCUCGuGGGCCCGGGaGCCCCc- -3'
miRNA:   3'- -CGGcGGGAGC-CCCGGGUCC-CGGGGau -5'
28992 5' -69.1 NC_006146.1 + 137114 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 136835 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 136464 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 136185 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135628 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 135349 0.76 0.074885
Target:  5'- cGCUGCCCgguccuggagcUCGGGGCCgggggcCGGGuGCCCCUGg -3'
miRNA:   3'- -CGGCGGG-----------AGCCCCGG------GUCC-CGGGGAU- -5'
28992 5' -69.1 NC_006146.1 + 5235 0.76 0.071289
Target:  5'- uGCCGgCCUCGGGGCUguGGGgUCCa- -3'
miRNA:   3'- -CGGCgGGAGCCCCGGguCCCgGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.