Results 21 - 40 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28993 | 3' | -60.6 | NC_006146.1 | + | 28755 | 0.66 | 0.753716 |
Target: 5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3' miRNA: 3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 19521 | 0.66 | 0.753716 |
Target: 5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3' miRNA: 3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 44783 | 0.66 | 0.752787 |
Target: 5'- aCGGGaaaGGCagcggCCCGGGGGCCAggaggaacacgcaaAGGUUCa -3' miRNA: 3'- -GCCCa--CCG-----GGGUCUCCGGU--------------UUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 47316 | 0.66 | 0.746256 |
Target: 5'- cCGGGccuccuggaugaUGGCCuCCAGccGGGCCAGgcgccguuuccAGUCUg -3' miRNA: 3'- -GCCC------------ACCGG-GGUC--UCCGGUU-----------UCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 130034 | 0.66 | 0.746256 |
Target: 5'- uGGG-GGCCUCgggguggagGGAGGCCAGGGa--- -3' miRNA: 3'- gCCCaCCGGGG---------UCUCCGGUUUCagga -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 143471 | 0.66 | 0.745319 |
Target: 5'- uGGGUGGCCagGGAaguuccgGGCCAgcGUCa- -3' miRNA: 3'- gCCCACCGGggUCU-------CCGGUuuCAGga -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 27530 | 0.66 | 0.736847 |
Target: 5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3' miRNA: 3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 24452 | 0.66 | 0.736847 |
Target: 5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3' miRNA: 3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 15219 | 0.66 | 0.736847 |
Target: 5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3' miRNA: 3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 18297 | 0.66 | 0.736847 |
Target: 5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3' miRNA: 3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 115768 | 0.66 | 0.736847 |
Target: 5'- uGGG-GGUCCCgauaaacauGGAGGUgGAGGcCCUg -3' miRNA: 3'- gCCCaCCGGGG---------UCUCCGgUUUCaGGA- -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 21375 | 0.66 | 0.736847 |
Target: 5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3' miRNA: 3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 47718 | 0.66 | 0.727353 |
Target: 5'- cCGGG-GGCCCCgcaaccuggcuGGAacuggccgcggcGGCCGAAGaCCa -3' miRNA: 3'- -GCCCaCCGGGG-----------UCU------------CCGGUUUCaGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 137859 | 0.66 | 0.727353 |
Target: 5'- uGGGUgggcgugucccgGGCCCCGccccGGGCCGgcaggGGGUCCc -3' miRNA: 3'- gCCCA------------CCGGGGUc---UCCGGU-----UUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 129340 | 0.66 | 0.727353 |
Target: 5'- aCGGGUGGgcuucCCgCCGGAGGCCcugcGcCCg -3' miRNA: 3'- -GCCCACC-----GG-GGUCUCCGGuuu-CaGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 42324 | 0.66 | 0.717782 |
Target: 5'- gCGaGGUugcugacuGGCCCgGGAGGUCAGuGUCUg -3' miRNA: 3'- -GC-CCA--------CCGGGgUCUCCGGUUuCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 39619 | 0.66 | 0.708142 |
Target: 5'- aCGGGccaGGCCCC---GGCCAacuucugcuucAAGUCCa -3' miRNA: 3'- -GCCCa--CCGGGGucuCCGGU-----------UUCAGGa -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 26507 | 0.66 | 0.698442 |
Target: 5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3' miRNA: 3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 23429 | 0.66 | 0.698442 |
Target: 5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3' miRNA: 3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5' |
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28993 | 3' | -60.6 | NC_006146.1 | + | 20352 | 0.66 | 0.698442 |
Target: 5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3' miRNA: 3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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