miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28993 3' -60.6 NC_006146.1 + 2159 0.68 0.619637
Target:  5'- aGGG-GGCCCguGgacAGGCC-GAGUUCUg -3'
miRNA:   3'- gCCCaCCGGGguC---UCCGGuUUCAGGA- -5'
28993 3' -60.6 NC_006146.1 + 4933 0.68 0.580208
Target:  5'- uCGGGUGgccgugcucuguGCCCCGGGGaCCAGGGgCCa -3'
miRNA:   3'- -GCCCAC------------CGGGGUCUCcGGUUUCaGGa -5'
28993 3' -60.6 NC_006146.1 + 5221 0.67 0.677913
Target:  5'- gGGGUgcagguccuugccGGCCUCGG-GGCUguGGGGUCCa -3'
miRNA:   3'- gCCCA-------------CCGGGGUCuCCGG--UUUCAGGa -5'
28993 3' -60.6 NC_006146.1 + 5936 0.67 0.653278
Target:  5'- gGGGUGGCUgcgcuugagcgaCCAGAGGUgCGcugcuugaaacauaaGAGUCCa -3'
miRNA:   3'- gCCCACCGG------------GGUCUCCG-GU---------------UUCAGGa -5'
28993 3' -60.6 NC_006146.1 + 8816 0.7 0.466597
Target:  5'- uGGGcgaGGacaCCCAGGGGCCGucGAGUCUUu -3'
miRNA:   3'- gCCCa--CCg--GGGUCUCCGGU--UUCAGGA- -5'
28993 3' -60.6 NC_006146.1 + 9347 0.66 0.755571
Target:  5'- gGGGUGGCggCuGAGGuCCGAGGgggcgCCUg -3'
miRNA:   3'- gCCCACCGggGuCUCC-GGUUUCa----GGA- -5'
28993 3' -60.6 NC_006146.1 + 13121 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28993 3' -60.6 NC_006146.1 + 13253 0.69 0.570422
Target:  5'- aGGGcGGCCgCCuuGGGGCcCGGAGUCUc -3'
miRNA:   3'- gCCCaCCGG-GGu-CUCCG-GUUUCAGGa -5'
28993 3' -60.6 NC_006146.1 + 13270 0.67 0.639431
Target:  5'- aGGGgaccgGcGCCCCAGAGcCCcucGGGUCCg -3'
miRNA:   3'- gCCCa----C-CGGGGUCUCcGGu--UUCAGGa -5'
28993 3' -60.6 NC_006146.1 + 13349 0.68 0.599878
Target:  5'- cCGGGUcuugGGCCUgGGAGGuCCGGGGUgUUg -3'
miRNA:   3'- -GCCCA----CCGGGgUCUCC-GGUUUCAgGA- -5'
28993 3' -60.6 NC_006146.1 + 13365 0.66 0.753716
Target:  5'- aGGGgagccgcccucgGGgCCCAG-GGCCccuAGUCCa -3'
miRNA:   3'- gCCCa-----------CCgGGGUCuCCGGuu-UCAGGa -5'
28993 3' -60.6 NC_006146.1 + 13467 1.07 0.001687
Target:  5'- cCGGGUGGCCCCAGAGGCCAAAGUCCUc -3'
miRNA:   3'- -GCCCACCGGGGUCUCCGGUUUCAGGA- -5'
28993 3' -60.6 NC_006146.1 + 13670 0.68 0.590029
Target:  5'- aGGGgugaggacuuUGGCCUCuGGGGCCAcccgggcugccgGGGUCCc -3'
miRNA:   3'- gCCC----------ACCGGGGuCUCCGGU------------UUCAGGa -5'
28993 3' -60.6 NC_006146.1 + 13792 0.69 0.570422
Target:  5'- uGGGUcuggacuggagGGCCCUgGGAGGCCccuGUCCg -3'
miRNA:   3'- gCCCA-----------CCGGGG-UCUCCGGuuuCAGGa -5'
28993 3' -60.6 NC_006146.1 + 13899 0.66 0.755571
Target:  5'- -uGGUGGaCCCgAGAGGCCGAAa---- -3'
miRNA:   3'- gcCCACC-GGGgUCUCCGGUUUcagga -5'
28993 3' -60.6 NC_006146.1 + 14196 0.66 0.698442
Target:  5'- uCGGGgcgaguggacgGGCCUgGGAGGCU--GGUUCUg -3'
miRNA:   3'- -GCCCa----------CCGGGgUCUCCGGuuUCAGGA- -5'
28993 3' -60.6 NC_006146.1 + 14397 0.67 0.669064
Target:  5'- uCGGGcUGGCCugCCAGGGGgCAAAGggggCUc -3'
miRNA:   3'- -GCCC-ACCGG--GGUCUCCgGUUUCa---GGa -5'
28993 3' -60.6 NC_006146.1 + 15219 0.66 0.736847
Target:  5'- uGGG-GGCCC---GGGCCuggAAGGUCCg -3'
miRNA:   3'- gCCCaCCGGGgucUCCGG---UUUCAGGa -5'
28993 3' -60.6 NC_006146.1 + 16199 0.66 0.755571
Target:  5'- gCGGGgccagGGCCuCCAGAGGCaCcAGGcUCa- -3'
miRNA:   3'- -GCCCa----CCGG-GGUCUCCG-GuUUC-AGga -5'
28993 3' -60.6 NC_006146.1 + 16331 0.69 0.570422
Target:  5'- aGGGcGGCCgCCuuGGGGCcCGGAGUCUc -3'
miRNA:   3'- gCCCaCCGG-GGu-CUCCG-GUUUCAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.