miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 3' -58 NC_006146.1 + 29516 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 26438 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 17204 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 14126 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 20282 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 23360 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 128516 0.73 0.418181
Target:  5'- -gGGGUGGCCCUgGGGCgccccucgcccaccCUGGCggcGCg -3'
miRNA:   3'- aaUCCACUGGGAgCCCG--------------GACCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 153504 0.71 0.543231
Target:  5'- cUGGGcGACCUggccCGGGCCUGGUg--- -3'
miRNA:   3'- aAUCCaCUGGGa---GCCCGGACCGaaug -5'
28994 3' -58 NC_006146.1 + 27450 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 24373 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 21295 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 18217 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 15139 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 95002 0.69 0.624131
Target:  5'- --uGGUGggcaACCCcCGGGCCUcGGCcUACg -3'
miRNA:   3'- aauCCAC----UGGGaGCCCGGA-CCGaAUG- -5'
28994 3' -58 NC_006146.1 + 126052 0.69 0.654765
Target:  5'- -gAGGagGGCCUcgCGGGCCUugGGCUUGa -3'
miRNA:   3'- aaUCCa-CUGGGa-GCCCGGA--CCGAAUg -5'
28994 3' -58 NC_006146.1 + 101965 0.69 0.664951
Target:  5'- cUAGG-GGCUC-CGGGCuCUGGCUa-- -3'
miRNA:   3'- aAUCCaCUGGGaGCCCG-GACCGAaug -5'
28994 3' -58 NC_006146.1 + 59257 0.68 0.685236
Target:  5'- cUGGGUGuuCa--GGGCCUGGCcgACg -3'
miRNA:   3'- aAUCCACugGgagCCCGGACCGaaUG- -5'
28994 3' -58 NC_006146.1 + 40697 0.68 0.695317
Target:  5'- -gAGGUGcuuucuacacgaGCCCUCGGGUCUcagguccgGGCagGCg -3'
miRNA:   3'- aaUCCAC------------UGGGAGCCCGGA--------CCGaaUG- -5'
28994 3' -58 NC_006146.1 + 30368 0.68 0.705345
Target:  5'- -gGGGUGccguCCCUCccaGGGCUaGGUUUGCu -3'
miRNA:   3'- aaUCCACu---GGGAG---CCCGGaCCGAAUG- -5'
28994 3' -58 NC_006146.1 + 28346 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.