Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28994 | 3' | -58 | NC_006146.1 | + | 28346 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 12955 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 16034 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 19112 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 22190 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 20412 | 0.68 | 0.721258 |
Target: 5'- -gGGaGUGGCCagggggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag--------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 4526 | 0.68 | 0.725207 |
Target: 5'- -gGGGUGACCauCUCGGuGCC-GGCa--- -3' miRNA: 3'- aaUCCACUGG--GAGCC-CGGaCCGaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 113674 | 0.67 | 0.735023 |
Target: 5'- -gAGGUGGCUCgggccCGGGCCcGGCc--- -3' miRNA: 3'- aaUCCACUGGGa----GCCCGGaCCGaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 29996 | 0.67 | 0.735023 |
Target: 5'- aUAaGUGGCCCUUGuGGCUUGGUUg-- -3' miRNA: 3'- aAUcCACUGGGAGC-CCGGACCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 82885 | 0.67 | 0.754379 |
Target: 5'- aUAGGgcaACUgUUGGGCCUGuGUUUGCu -3' miRNA: 3'- aAUCCac-UGGgAGCCCGGAC-CGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 85917 | 0.67 | 0.754379 |
Target: 5'- -cGGGgcuuuACCCUgGGGCCUGGaugGCc -3' miRNA: 3'- aaUCCac---UGGGAgCCCGGACCgaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 108053 | 0.67 | 0.754379 |
Target: 5'- --uGGUGAagagaaCCUCcGGCCUGGCcacgGCg -3' miRNA: 3'- aauCCACUg-----GGAGcCCGGACCGaa--UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 23490 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 14257 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 17335 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 26568 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 29646 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 155684 | 0.67 | 0.763901 |
Target: 5'- -cAGGUGGCCUcagaGGGgCUGGCccgGCu -3' miRNA: 3'- aaUCCACUGGGag--CCCgGACCGaa-UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 142319 | 0.67 | 0.763901 |
Target: 5'- cUGGGagcauACCCUgGGGCCgagGGCUcACu -3' miRNA: 3'- aAUCCac---UGGGAgCCCGGa--CCGAaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 170809 | 0.67 | 0.763901 |
Target: 5'- -cGGGaaGACCCgggggCGGGCCcGGCgcGCu -3' miRNA: 3'- aaUCCa-CUGGGa----GCCCGGaCCGaaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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