miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 3' -58 NC_006146.1 + 12872 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 28261 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 25183 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 22105 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 44090 0.67 0.763901
Target:  5'- -gGGGUGGuuccaCCUCGGGCCgcgcGCUcgGCg -3'
miRNA:   3'- aaUCCACUg----GGAGCCCGGac--CGAa-UG- -5'
28994 3' -58 NC_006146.1 + 15950 0.67 0.763901
Target:  5'- cUGGGUGGCUgggcaggccgguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 170809 0.67 0.763901
Target:  5'- -cGGGaaGACCCgggggCGGGCCcGGCgcGCu -3'
miRNA:   3'- aaUCCa-CUGGGa----GCCCGGaCCGaaUG- -5'
28994 3' -58 NC_006146.1 + 155684 0.67 0.763901
Target:  5'- -cAGGUGGCCUcagaGGGgCUGGCccgGCu -3'
miRNA:   3'- aaUCCACUGGGag--CCCgGACCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 142319 0.67 0.763901
Target:  5'- cUGGGagcauACCCUgGGGCCgagGGCUcACu -3'
miRNA:   3'- aAUCCac---UGGGAgCCCGGa--CCGAaUG- -5'
28994 3' -58 NC_006146.1 + 17335 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 23490 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 26568 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 29646 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 14257 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 108053 0.67 0.754379
Target:  5'- --uGGUGAagagaaCCUCcGGCCUGGCcacgGCg -3'
miRNA:   3'- aauCCACUg-----GGAGcCCGGACCGaa--UG- -5'
28994 3' -58 NC_006146.1 + 82885 0.67 0.754379
Target:  5'- aUAGGgcaACUgUUGGGCCUGuGUUUGCu -3'
miRNA:   3'- aAUCCac-UGGgAGCCCGGAC-CGAAUG- -5'
28994 3' -58 NC_006146.1 + 85917 0.67 0.754379
Target:  5'- -cGGGgcuuuACCCUgGGGCCUGGaugGCc -3'
miRNA:   3'- aaUCCac---UGGGAgCCCGGACCgaaUG- -5'
28994 3' -58 NC_006146.1 + 29996 0.67 0.735023
Target:  5'- aUAaGUGGCCCUUGuGGCUUGGUUg-- -3'
miRNA:   3'- aAUcCACUGGGAGC-CCGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 113674 0.67 0.735023
Target:  5'- -gAGGUGGCUCgggccCGGGCCcGGCc--- -3'
miRNA:   3'- aaUCCACUGGGa----GCCCGGaCCGaaug -5'
28994 3' -58 NC_006146.1 + 4526 0.68 0.725207
Target:  5'- -gGGGUGACCauCUCGGuGCC-GGCa--- -3'
miRNA:   3'- aaUCCACUGG--GAGCC-CGGaCCGaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.