miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 3' -58 NC_006146.1 + 4526 0.68 0.725207
Target:  5'- -gGGGUGACCauCUCGGuGCC-GGCa--- -3'
miRNA:   3'- aaUCCACUGG--GAGCC-CGGaCCGaaug -5'
28994 3' -58 NC_006146.1 + 5376 0.66 0.826789
Target:  5'- -cAGG-GAaaacgUCUCGGGCCUGGCc--- -3'
miRNA:   3'- aaUCCaCUg----GGAGCCCGGACCGaaug -5'
28994 3' -58 NC_006146.1 + 12460 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28994 3' -58 NC_006146.1 + 12648 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 12872 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 12955 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 14126 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 14257 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 15139 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 15539 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28994 3' -58 NC_006146.1 + 15727 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 15950 0.67 0.763901
Target:  5'- cUGGGUGGCUgggcaggccgguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 16034 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 17204 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 17335 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 18217 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 18617 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28994 3' -58 NC_006146.1 + 18805 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 19027 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 19112 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.