miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 3' -58 NC_006146.1 + 20282 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 20412 0.68 0.721258
Target:  5'- -gGGaGUGGCCagggggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag--------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 21295 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 21695 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28994 3' -58 NC_006146.1 + 21883 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 22105 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 22190 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 23360 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 23490 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 24373 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 24773 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28994 3' -58 NC_006146.1 + 24961 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 25183 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5'
28994 3' -58 NC_006146.1 + 25268 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 26438 1.06 0.002711
Target:  5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3'
miRNA:   3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5'
28994 3' -58 NC_006146.1 + 26568 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 27450 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 27851 0.66 0.826789
Target:  5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3'
miRNA:   3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5'
28994 3' -58 NC_006146.1 + 28039 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 28261 0.67 0.772371
Target:  5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3'
miRNA:   3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.