miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 3' -58 NC_006146.1 + 170809 0.67 0.763901
Target:  5'- -cGGGaaGACCCgggggCGGGCCcGGCgcGCu -3'
miRNA:   3'- aaUCCa-CUGGGa----GCCCGGaCCGaaUG- -5'
28994 3' -58 NC_006146.1 + 155989 0.66 0.835133
Target:  5'- --cGGUGGCCCccaGGGCCaccgagcGGCUcuucUGCg -3'
miRNA:   3'- aauCCACUGGGag-CCCGGa------CCGA----AUG- -5'
28994 3' -58 NC_006146.1 + 155684 0.67 0.763901
Target:  5'- -cAGGUGGCCUcagaGGGgCUGGCccgGCu -3'
miRNA:   3'- aaUCCACUGGGag--CCCgGACCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 153504 0.71 0.543231
Target:  5'- cUGGGcGACCUggccCGGGCCUGGUg--- -3'
miRNA:   3'- aAUCCaCUGGGa---GCCCGGACCGaaug -5'
28994 3' -58 NC_006146.1 + 151903 0.66 0.826789
Target:  5'- -gAGGgGGCCCccacUgGGGUCUGGCUccgGCc -3'
miRNA:   3'- aaUCCaCUGGG----AgCCCGGACCGAa--UG- -5'
28994 3' -58 NC_006146.1 + 146839 0.66 0.826789
Target:  5'- -cAGcGUaGAgCC-CGGGCCUGGCUc-- -3'
miRNA:   3'- aaUC-CA-CUgGGaGCCCGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 142319 0.67 0.763901
Target:  5'- cUGGGagcauACCCUgGGGCCgagGGCUcACu -3'
miRNA:   3'- aAUCCac---UGGGAgCCCGGa--CCGAaUG- -5'
28994 3' -58 NC_006146.1 + 128516 0.73 0.418181
Target:  5'- -gGGGUGGCCCUgGGGCgccccucgcccaccCUGGCggcGCg -3'
miRNA:   3'- aaUCCACUGGGAgCCCG--------------GACCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 126052 0.69 0.654765
Target:  5'- -gAGGagGGCCUcgCGGGCCUugGGCUUGa -3'
miRNA:   3'- aaUCCa-CUGGGa-GCCCGGA--CCGAAUg -5'
28994 3' -58 NC_006146.1 + 113674 0.67 0.735023
Target:  5'- -gAGGUGGCUCgggccCGGGCCcGGCc--- -3'
miRNA:   3'- aaUCCACUGGGa----GCCCGGaCCGaaug -5'
28994 3' -58 NC_006146.1 + 108053 0.67 0.754379
Target:  5'- --uGGUGAagagaaCCUCcGGCCUGGCcacgGCg -3'
miRNA:   3'- aauCCACUg-----GGAGcCCGGACCGaa--UG- -5'
28994 3' -58 NC_006146.1 + 101965 0.69 0.664951
Target:  5'- cUAGG-GGCUC-CGGGCuCUGGCUa-- -3'
miRNA:   3'- aAUCCaCUGGGaGCCCG-GACCGAaug -5'
28994 3' -58 NC_006146.1 + 95002 0.69 0.624131
Target:  5'- --uGGUGggcaACCCcCGGGCCUcGGCcUACg -3'
miRNA:   3'- aauCCAC----UGGGaGCCCGGA-CCGaAUG- -5'
28994 3' -58 NC_006146.1 + 85917 0.67 0.754379
Target:  5'- -cGGGgcuuuACCCUgGGGCCUGGaugGCc -3'
miRNA:   3'- aaUCCac---UGGGAgCCCGGACCgaaUG- -5'
28994 3' -58 NC_006146.1 + 82885 0.67 0.754379
Target:  5'- aUAGGgcaACUgUUGGGCCUGuGUUUGCu -3'
miRNA:   3'- aAUCCac-UGGgAGCCCGGAC-CGAAUG- -5'
28994 3' -58 NC_006146.1 + 59257 0.68 0.685236
Target:  5'- cUGGGUGuuCa--GGGCCUGGCcgACg -3'
miRNA:   3'- aAUCCACugGgagCCCGGACCGaaUG- -5'
28994 3' -58 NC_006146.1 + 52768 0.66 0.80958
Target:  5'- --cGGUGACgCUgaGGGCC-GGCggGCg -3'
miRNA:   3'- aauCCACUGgGAg-CCCGGaCCGaaUG- -5'
28994 3' -58 NC_006146.1 + 47398 0.66 0.818269
Target:  5'- -gAGGcGGCCag-GGGCCUGGCg--- -3'
miRNA:   3'- aaUCCaCUGGgagCCCGGACCGaaug -5'
28994 3' -58 NC_006146.1 + 44090 0.67 0.763901
Target:  5'- -gGGGUGGuuccaCCUCGGGCCgcgcGCUcgGCg -3'
miRNA:   3'- aaUCCACUg----GGAGCCCGGac--CGAa-UG- -5'
28994 3' -58 NC_006146.1 + 41351 0.66 0.835133
Target:  5'- ----cUGGCCCa-GGGCCUGGCg--- -3'
miRNA:   3'- aauccACUGGGagCCCGGACCGaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.