Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28994 | 3' | -58 | NC_006146.1 | + | 14126 | 1.06 | 0.002711 |
Target: 5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3' miRNA: 3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 12872 | 0.67 | 0.772371 |
Target: 5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3' miRNA: 3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 22105 | 0.67 | 0.772371 |
Target: 5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3' miRNA: 3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 41351 | 0.66 | 0.835133 |
Target: 5'- ----cUGGCCCa-GGGCCUGGCg--- -3' miRNA: 3'- aauccACUGGGagCCCGGACCGaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 26438 | 1.06 | 0.002711 |
Target: 5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3' miRNA: 3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 29516 | 1.06 | 0.002711 |
Target: 5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3' miRNA: 3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 101965 | 0.69 | 0.664951 |
Target: 5'- cUAGG-GGCUC-CGGGCuCUGGCUa-- -3' miRNA: 3'- aAUCCaCUGGGaGCCCG-GACCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 59257 | 0.68 | 0.685236 |
Target: 5'- cUGGGUGuuCa--GGGCCUGGCcgACg -3' miRNA: 3'- aAUCCACugGgagCCCGGACCGaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 4526 | 0.68 | 0.725207 |
Target: 5'- -gGGGUGACCauCUCGGuGCC-GGCa--- -3' miRNA: 3'- aaUCCACUGG--GAGCC-CGGaCCGaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 44090 | 0.67 | 0.763901 |
Target: 5'- -gGGGUGGuuccaCCUCGGGCCgcgcGCUcgGCg -3' miRNA: 3'- aaUCCACUg----GGAGCCCGGac--CGAa-UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 108053 | 0.67 | 0.754379 |
Target: 5'- --uGGUGAagagaaCCUCcGGCCUGGCcacgGCg -3' miRNA: 3'- aauCCACUg-----GGAGcCCGGACCGaa--UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 30368 | 0.68 | 0.705345 |
Target: 5'- -gGGGUGccguCCCUCccaGGGCUaGGUUUGCu -3' miRNA: 3'- aaUCCACu---GGGAG---CCCGGaCCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 17204 | 1.06 | 0.002711 |
Target: 5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3' miRNA: 3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 85917 | 0.67 | 0.754379 |
Target: 5'- -cGGGgcuuuACCCUgGGGCCUGGaugGCc -3' miRNA: 3'- aaUCCac---UGGGAgCCCGGACCgaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 20282 | 1.06 | 0.002711 |
Target: 5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3' miRNA: 3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 40697 | 0.68 | 0.695317 |
Target: 5'- -gAGGUGcuuucuacacgaGCCCUCGGGUCUcagguccgGGCagGCg -3' miRNA: 3'- aaUCCAC------------UGGGAGCCCGGA--------CCGaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 15950 | 0.67 | 0.763901 |
Target: 5'- cUGGGUGGCUgggcaggccgguCUCGGGUCUGGg---- -3' miRNA: 3'- aAUCCACUGG------------GAGCCCGGACCgaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 19027 | 0.67 | 0.772371 |
Target: 5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3' miRNA: 3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 23360 | 1.06 | 0.002711 |
Target: 5'- uUUAGGUGACCCUCGGGCCUGGCUUACc -3' miRNA: 3'- -AAUCCACUGGGAGCCCGGACCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 128516 | 0.73 | 0.418181 |
Target: 5'- -gGGGUGGCCCUgGGGCgccccucgcccaccCUGGCggcGCg -3' miRNA: 3'- aaUCCACUGGGAgCCCG--------------GACCGaa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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