Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28994 | 3' | -58 | NC_006146.1 | + | 40697 | 0.68 | 0.695317 |
Target: 5'- -gAGGUGcuuucuacacgaGCCCUCGGGUCUcagguccgGGCagGCg -3' miRNA: 3'- aaUCCAC------------UGGGAGCCCGGA--------CCGaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 24773 | 0.66 | 0.826789 |
Target: 5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3' miRNA: 3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 22105 | 0.67 | 0.772371 |
Target: 5'- cUGGGUGGCUgggcaggccggguCUCGGGUCUGGg---- -3' miRNA: 3'- aAUCCACUGG-------------GAGCCCGGACCgaaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 59257 | 0.68 | 0.685236 |
Target: 5'- cUGGGUGuuCa--GGGCCUGGCcgACg -3' miRNA: 3'- aAUCCACugGgagCCCGGACCGaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 12460 | 0.66 | 0.826789 |
Target: 5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3' miRNA: 3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 27851 | 0.66 | 0.826789 |
Target: 5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3' miRNA: 3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 21695 | 0.66 | 0.826789 |
Target: 5'- -cGGGgccuuucaGGCCCUCGGGCCccucUGGaCUccgGCu -3' miRNA: 3'- aaUCCa-------CUGGGAGCCCGG----ACC-GAa--UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 101965 | 0.69 | 0.664951 |
Target: 5'- cUAGG-GGCUC-CGGGCuCUGGCUa-- -3' miRNA: 3'- aAUCCaCUGGGaGCCCG-GACCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 128516 | 0.73 | 0.418181 |
Target: 5'- -gGGGUGGCCCUgGGGCgccccucgcccaccCUGGCggcGCg -3' miRNA: 3'- aaUCCACUGGGAgCCCG--------------GACCGaa-UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 30368 | 0.68 | 0.705345 |
Target: 5'- -gGGGUGccguCCCUCccaGGGCUaGGUUUGCu -3' miRNA: 3'- aaUCCACu---GGGAG---CCCGGaCCGAAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 44090 | 0.67 | 0.763901 |
Target: 5'- -gGGGUGGuuccaCCUCGGGCCgcgcGCUcgGCg -3' miRNA: 3'- aaUCCACUg----GGAGCCCGGac--CGAa-UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 24961 | 0.66 | 0.818269 |
Target: 5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3' miRNA: 3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 15139 | 0.71 | 0.5532 |
Target: 5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3' miRNA: 3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 95002 | 0.69 | 0.624131 |
Target: 5'- --uGGUGggcaACCCcCGGGCCUcGGCcUACg -3' miRNA: 3'- aauCCAC----UGGGaGCCCGGA-CCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 126052 | 0.69 | 0.654765 |
Target: 5'- -gAGGagGGCCUcgCGGGCCUugGGCUUGa -3' miRNA: 3'- aaUCCa-CUGGGa-GCCCGGA--CCGAAUg -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 28346 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 25268 | 0.68 | 0.70934 |
Target: 5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3' miRNA: 3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 170809 | 0.67 | 0.763901 |
Target: 5'- -cGGGaaGACCCgggggCGGGCCcGGCgcGCu -3' miRNA: 3'- aaUCCa-CUGGGa----GCCCGGaCCGaaUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 14257 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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28994 | 3' | -58 | NC_006146.1 | + | 17335 | 0.67 | 0.758201 |
Target: 5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3' miRNA: 3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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