miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 3' -58 NC_006146.1 + 24961 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 21883 0.66 0.818269
Target:  5'- -gAGGgccugaaaGGCCC-CGGcGCCUGGCUc-- -3'
miRNA:   3'- aaUCCa-------CUGGGaGCC-CGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 47398 0.66 0.818269
Target:  5'- -gAGGcGGCCag-GGGCCUGGCg--- -3'
miRNA:   3'- aaUCCaCUGGgagCCCGGACCGaaug -5'
28994 3' -58 NC_006146.1 + 26568 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 29646 0.67 0.758201
Target:  5'- -gGGaGUGGCCagggaggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag---------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 28346 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 126052 0.69 0.654765
Target:  5'- -gAGGagGGCCUcgCGGGCCUugGGCUUGa -3'
miRNA:   3'- aaUCCa-CUGGGa-GCCCGGA--CCGAAUg -5'
28994 3' -58 NC_006146.1 + 95002 0.69 0.624131
Target:  5'- --uGGUGggcaACCCcCGGGCCUcGGCcUACg -3'
miRNA:   3'- aauCCAC----UGGGaGCCCGGA-CCGaAUG- -5'
28994 3' -58 NC_006146.1 + 15139 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 22190 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 21295 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 24373 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 27450 0.71 0.5532
Target:  5'- -gAGGUGGCCC-CGGGCgCagGGCaagGCg -3'
miRNA:   3'- aaUCCACUGGGaGCCCG-Ga-CCGaa-UG- -5'
28994 3' -58 NC_006146.1 + 153504 0.71 0.543231
Target:  5'- cUGGGcGACCUggccCGGGCCUGGUg--- -3'
miRNA:   3'- aAUCCaCUGGGa---GCCCGGACCGaaug -5'
28994 3' -58 NC_006146.1 + 16034 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 19112 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 12955 0.68 0.70934
Target:  5'- --uGGUGGCgcccgccggcuccaaCCUCGGGCCUcugGGCUg-- -3'
miRNA:   3'- aauCCACUG---------------GGAGCCCGGA---CCGAaug -5'
28994 3' -58 NC_006146.1 + 20412 0.68 0.721258
Target:  5'- -gGGaGUGGCCagggggacggaGGGCCUGGCcUGCg -3'
miRNA:   3'- aaUC-CACUGGgag--------CCCGGACCGaAUG- -5'
28994 3' -58 NC_006146.1 + 29996 0.67 0.735023
Target:  5'- aUAaGUGGCCCUUGuGGCUUGGUUg-- -3'
miRNA:   3'- aAUcCACUGGGAGC-CCGGACCGAaug -5'
28994 3' -58 NC_006146.1 + 82885 0.67 0.754379
Target:  5'- aUAGGgcaACUgUUGGGCCUGuGUUUGCu -3'
miRNA:   3'- aAUCCac-UGGgAGCCCGGAC-CGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.