miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28994 5' -54.5 NC_006146.1 + 3402 0.66 0.952825
Target:  5'- cUG-AAGCgUGCCUgUGaAGUggcaGGGUGCCa -3'
miRNA:   3'- uACaUUCGgACGGA-GC-UCA----UCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 95856 0.66 0.9442
Target:  5'- ---aGAGCCUGaCCgaggCGGGcgugGGGUGCa -3'
miRNA:   3'- uacaUUCGGAC-GGa---GCUCa---UCCACGg -5'
28994 5' -54.5 NC_006146.1 + 75729 0.66 0.9442
Target:  5'- -gGUAAGacaaCggaGCCUCG-GUGGGcGCCa -3'
miRNA:   3'- uaCAUUCg---Ga--CGGAGCuCAUCCaCGG- -5'
28994 5' -54.5 NC_006146.1 + 147599 0.66 0.929439
Target:  5'- -gGUGGGCUcGCUcUGGG-AGGUGCCc -3'
miRNA:   3'- uaCAUUCGGaCGGaGCUCaUCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 45067 0.66 0.929439
Target:  5'- -gGgcGGCUgaggUGCCUCGuggggagagGGaGGGUGCCg -3'
miRNA:   3'- uaCauUCGG----ACGGAGC---------UCaUCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 31654 0.67 0.923471
Target:  5'- ---aAGGCCcccacggUGCC-CGGGgGGGUGCCu -3'
miRNA:   3'- uacaUUCGG-------ACGGaGCUCaUCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 41781 0.67 0.923471
Target:  5'- ---cGGGCCUcuccGCCUCGgccagccAGUAGGcgGCCg -3'
miRNA:   3'- uacaUUCGGA----CGGAGC-------UCAUCCa-CGG- -5'
28994 5' -54.5 NC_006146.1 + 71463 0.67 0.911856
Target:  5'- gAUGUGgaacuguuuccagGGCCUGCCguuuggCcGGU-GGUGCCu -3'
miRNA:   3'- -UACAU-------------UCGGACGGa-----GcUCAuCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 99035 0.67 0.899916
Target:  5'- cGUGUAgaGGCCccccaggGCCcggCGGGUGucggcGGUGCCg -3'
miRNA:   3'- -UACAU--UCGGa------CGGa--GCUCAU-----CCACGG- -5'
28994 5' -54.5 NC_006146.1 + 143398 0.68 0.893283
Target:  5'- -cGUGAGCCUGCU--GAGUccGUGUCc -3'
miRNA:   3'- uaCAUUCGGACGGagCUCAucCACGG- -5'
28994 5' -54.5 NC_006146.1 + 38455 0.68 0.879313
Target:  5'- ------cCCUGCCUCcgGGGUgacGGGUGCCa -3'
miRNA:   3'- uacauucGGACGGAG--CUCA---UCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 120208 0.68 0.879313
Target:  5'- ---cAGGCCUGCCggUCGGugccuGUGGG-GCCg -3'
miRNA:   3'- uacaUUCGGACGG--AGCU-----CAUCCaCGG- -5'
28994 5' -54.5 NC_006146.1 + 53453 0.68 0.879313
Target:  5'- -gGUGGuGUCUGCC-CGGGaggcgcGGGUGCCu -3'
miRNA:   3'- uaCAUU-CGGACGGaGCUCa-----UCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 139092 0.68 0.856667
Target:  5'- ---cGGGCCUcGCCUgGAGUuggguugcgugGGGUGUCa -3'
miRNA:   3'- uacaUUCGGA-CGGAgCUCA-----------UCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 74750 0.69 0.823572
Target:  5'- -aGUGAGCCaGCCUCcGG-GGG-GCCa -3'
miRNA:   3'- uaCAUUCGGaCGGAGcUCaUCCaCGG- -5'
28994 5' -54.5 NC_006146.1 + 149932 0.7 0.768723
Target:  5'- -cGU-AGCCUGcCCUCGGGguugAGGggcGCCc -3'
miRNA:   3'- uaCAuUCGGAC-GGAGCUCa---UCCa--CGG- -5'
28994 5' -54.5 NC_006146.1 + 94167 0.71 0.760056
Target:  5'- -cGUGGGCCUccacgaagcugucgGCCUCGAgcguGUccaugaagucgccgaAGGUGCCg -3'
miRNA:   3'- uaCAUUCGGA--------------CGGAGCU----CA---------------UCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 130043 0.71 0.759087
Target:  5'- -cGgcGGCCcuggggGCCUCGGGguggAGGgagGCCa -3'
miRNA:   3'- uaCauUCGGa-----CGGAGCUCa---UCCa--CGG- -5'
28994 5' -54.5 NC_006146.1 + 122951 0.71 0.753249
Target:  5'- uUGUcGAGCCUGUCcacgcagcgggaggCGGGgAGGUGCCa -3'
miRNA:   3'- uACA-UUCGGACGGa-------------GCUCaUCCACGG- -5'
28994 5' -54.5 NC_006146.1 + 93137 0.71 0.729523
Target:  5'- cUGggccgGAGCCggugGCCUUGG--AGGUGCCg -3'
miRNA:   3'- uACa----UUCGGa---CGGAGCUcaUCCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.