Results 21 - 40 of 467 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28995 | 3' | -64.4 | NC_006146.1 | + | 78796 | 0.66 | 0.555115 |
Target: 5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3' miRNA: 3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 79035 | 0.66 | 0.555115 |
Target: 5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3' miRNA: 3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 79065 | 0.66 | 0.555115 |
Target: 5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3' miRNA: 3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 79095 | 0.66 | 0.555115 |
Target: 5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3' miRNA: 3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 113865 | 0.66 | 0.555115 |
Target: 5'- gGGCCCGGgCCCgAGCCaCCuCUCGucGACc -3' miRNA: 3'- -UCGGGCUgGGGgUCGGcGG-GGGU--UUG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 149784 | 0.66 | 0.555115 |
Target: 5'- cAGCCUccuCUCCC-GCCGCCCCUu--- -3' miRNA: 3'- -UCGGGcu-GGGGGuCGGCGGGGGuuug -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 51873 | 0.66 | 0.555115 |
Target: 5'- cAGCCCccgCCCC-GUCGCCCCCc--- -3' miRNA: 3'- -UCGGGcugGGGGuCGGCGGGGGuuug -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 44511 | 0.66 | 0.555115 |
Target: 5'- -cCCCGGCUgCCaCGGCCccaGCCCCCAc-- -3' miRNA: 3'- ucGGGCUGG-GG-GUCGG---CGGGGGUuug -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 78886 | 0.66 | 0.555115 |
Target: 5'- gGGCCCGGCCUggGGCUGCUgCUggGg -3' miRNA: 3'- -UCGGGCUGGGggUCGGCGGgGGuuUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 110423 | 0.66 | 0.554167 |
Target: 5'- gAGCUgGcCCCCCGGCCucucaccGCuCCCCGc-- -3' miRNA: 3'- -UCGGgCuGGGGGUCGG-------CG-GGGGUuug -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 129380 | 0.66 | 0.554167 |
Target: 5'- gAGCCCgcgGAUCCCgGGCgucagccgggcguCGUCCCCGcGCa -3' miRNA: 3'- -UCGGG---CUGGGGgUCG-------------GCGGGGGUuUG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 56137 | 0.66 | 0.552273 |
Target: 5'- gGGcCCCGAgaccgagagcaccuCCCCgCGGCCGUCCUUGAGg -3' miRNA: 3'- -UC-GGGCU--------------GGGG-GUCGGCGGGGGUUUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 67256 | 0.66 | 0.552273 |
Target: 5'- cGGCCCGucugGCagagguggucuccgUCCCGGCCgacugucgGCUCCCGGACa -3' miRNA: 3'- -UCGGGC----UG--------------GGGGUCGG--------CGGGGGUUUG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 139339 | 0.66 | 0.54566 |
Target: 5'- -cCCCGggggacgggaGCCCCCguucGGCCcacaGCCCCCAauuGACa -3' miRNA: 3'- ucGGGC----------UGGGGG----UCGG----CGGGGGU---UUG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 55191 | 0.66 | 0.54566 |
Target: 5'- cGCCCGggggGCUUCCGGCCaCCCCgGGuACg -3' miRNA: 3'- uCGGGC----UGGGGGUCGGcGGGGgUU-UG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 156549 | 0.66 | 0.54566 |
Target: 5'- gGGaCCCGACCCCaccagcagGGCCGCaacggCCCu-GCg -3' miRNA: 3'- -UC-GGGCUGGGGg-------UCGGCGg----GGGuuUG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 43271 | 0.66 | 0.54566 |
Target: 5'- -aUCCG-CCUCCAGCCuCCCCUGGAg -3' miRNA: 3'- ucGGGCuGGGGGUCGGcGGGGGUUUg -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 3073 | 0.66 | 0.54566 |
Target: 5'- uGGCCCaGGCUaccgUCCAGaCCGCUCUgGAGCu -3' miRNA: 3'- -UCGGG-CUGG----GGGUC-GGCGGGGgUUUG- -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 50801 | 0.66 | 0.54566 |
Target: 5'- gAGCCgGucACgCUCAGCCGCCCUgAAu- -3' miRNA: 3'- -UCGGgC--UGgGGGUCGGCGGGGgUUug -5' |
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28995 | 3' | -64.4 | NC_006146.1 | + | 106659 | 0.66 | 0.54566 |
Target: 5'- gAGCCaCG-CCCCUc-CCGCCccggCCCAGGCg -3' miRNA: 3'- -UCGG-GCuGGGGGucGGCGG----GGGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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