miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28996 3' -51.5 NC_006146.1 + 158288 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 142897 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 117552 0.66 0.988773
Target:  5'- --gGGCCGCAuuca-GGCUGUucAGGg -3'
miRNA:   3'- uaaCCGGCGUuuuucCCGACAucUCC- -5'
28996 3' -51.5 NC_006146.1 + 152160 0.66 0.988773
Target:  5'- --gGGCCGgGuucuGGGCUuGUGGGGa -3'
miRNA:   3'- uaaCCGGCgUuuuuCCCGA-CAUCUCc -5'
28996 3' -51.5 NC_006146.1 + 155238 0.66 0.988773
Target:  5'- --gGGCCGgGuucuGGGCUuGUGGGGa -3'
miRNA:   3'- uaaCCGGCgUuuuuCCCGA-CAUCUCc -5'
28996 3' -51.5 NC_006146.1 + 157848 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 155209 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 154770 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 152131 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 149053 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 148615 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 158317 0.66 0.988773
Target:  5'- --gGGCCGgGuucuGGGCUuGUGGGGa -3'
miRNA:   3'- uaaCCGGCgUuuuuCCCGA-CAUCUCc -5'
28996 3' -51.5 NC_006146.1 + 145975 0.66 0.988773
Target:  5'- -gUGGCCugGCcu---GGGCUGU-GAGGc -3'
miRNA:   3'- uaACCGG--CGuuuuuCCCGACAuCUCC- -5'
28996 3' -51.5 NC_006146.1 + 145537 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 142459 0.66 0.988773
Target:  5'- --cGGCCGCcuu-GGGGCccggaGUcucGGAGGa -3'
miRNA:   3'- uaaCCGGCGuuuuUCCCGa----CA---UCUCC- -5'
28996 3' -51.5 NC_006146.1 + 92181 0.66 0.987243
Target:  5'- --gGGCC-CGGccuGGGGCUGcugcUGGGGGg -3'
miRNA:   3'- uaaCCGGcGUUuu-UCCCGAC----AUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 44498 0.66 0.987243
Target:  5'- --cGuuCGCGGAGAGGGCgc-AGAGGc -3'
miRNA:   3'- uaaCcgGCGUUUUUCCCGacaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 128079 0.66 0.987243
Target:  5'- --cGGCCucaugcagguGCGGGAGGGGCcgagGcAGGGGa -3'
miRNA:   3'- uaaCCGG----------CGUUUUUCCCGa---CaUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 92002 0.66 0.987243
Target:  5'- --gGGCC-CGGccuGGGGCUGcugcUGGGGGg -3'
miRNA:   3'- uaaCCGGcGUUuu-UCCCGAC----AUCUCC- -5'
28996 3' -51.5 NC_006146.1 + 92301 0.66 0.987243
Target:  5'- --gGGCC-CGGccuGGGGCUGcugcUGGGGGg -3'
miRNA:   3'- uaaCCGGcGUUuu-UCCCGAC----AUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.