miRNA: 3'- agGGAUa--GACGUCGGGaaaaGACGUC- -5'
miRNA: 3'- -AGGGAUAGACGuCGGGAaaAGACGuc -5'
miRNA: 3'- -AGGGAUAGACGUCGGGAAAAGACGUC- -5'
Results 21 - 23 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28996 | 5' | -52.4 | NC_006146.1 | + | 162331 | 0.77 | 0.498756 |
|
Target: 5'- -gCCUGgugCUGCAGCCCggg-CUGCAGc -3' miRNA: 3'- agGGAUa--GACGUCGGGaaaaGACGUC- -5' |
|||||||
| 28996 | 5' | -52.4 | NC_006146.1 | + | 63309 | 0.86 | 0.177072 |
|
Target: 5'- gUCCCUGUCUGCuGCCCUgcUCUGCc- -3' miRNA: 3'- -AGGGAUAGACGuCGGGAaaAGACGuc -5' |
|||||||
| 28996 | 5' | -52.4 | NC_006146.1 | + | 30284 | 1.09 | 0.005656 |
|
Target: 5'- uUCCCUAUCUGCAGCCCUUUUCUGCAGu -3' miRNA: 3'- -AGGGAUAGACGUCGGGAAAAGACGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home