miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 42672 0.66 0.997317
Target:  5'- --aGGgGAGGGUGAuccGGGC-CGCAGACc -3'
miRNA:   3'- ccaCUgCUUUUACU---CCCGgGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 76082 0.66 0.997317
Target:  5'- aGGUGcUGGAAuuacGGGaGCCCGCcGACa -3'
miRNA:   3'- -CCACuGCUUUuac-UCC-CGGGCGuUUG- -5'
28997 3' -50.6 NC_006146.1 + 160580 0.66 0.997317
Target:  5'- uGGUuuGCGAGAcUGGGcGGCCUGCcaaGGGCg -3'
miRNA:   3'- -CCAc-UGCUUUuACUC-CCGGGCG---UUUG- -5'
28997 3' -50.6 NC_006146.1 + 149834 0.66 0.997317
Target:  5'- uGGUGugGGcgGccAGGGCCUcgGCGAAg -3'
miRNA:   3'- -CCACugCUuuUacUCCCGGG--CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 121491 0.66 0.997271
Target:  5'- uGGUGugGAAcacAAUcuguccaGAGGGCaggugcacggccCCGUGAACg -3'
miRNA:   3'- -CCACugCUU---UUA-------CUCCCG------------GGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 155798 0.66 0.996828
Target:  5'- cGGUGGCcc---UGGGGGCCaccgaGuCAAACa -3'
miRNA:   3'- -CCACUGcuuuuACUCCCGGg----C-GUUUG- -5'
28997 3' -50.6 NC_006146.1 + 131216 0.66 0.996828
Target:  5'- aGGaGGCuGAGGcUGAGcGGCCUGCGGGg -3'
miRNA:   3'- -CCaCUG-CUUUuACUC-CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 39023 0.66 0.996776
Target:  5'- uGUGuCGcAAcccaaacAUGGGGGCCaGCAGGCa -3'
miRNA:   3'- cCACuGCuUU-------UACUCCCGGgCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 43654 0.66 0.996668
Target:  5'- --cGAgGAGGcugccgcuccagauGUGGcGGCCCGCAGGCu -3'
miRNA:   3'- ccaCUgCUUU--------------UACUcCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 46574 0.66 0.996269
Target:  5'- -cUGGCGAGGGacGGGGGCCUGgGGGa -3'
miRNA:   3'- ccACUGCUUUUa-CUCCCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 127892 0.66 0.996269
Target:  5'- gGGaGGCGggGAUG-GGGCgCUGCu--- -3'
miRNA:   3'- -CCaCUGCuuUUACuCCCG-GGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 163169 0.66 0.996269
Target:  5'- aGGggGAccCGGGAAaGGGGcGCCCGCcAACu -3'
miRNA:   3'- -CCa-CU--GCUUUUaCUCC-CGGGCGuUUG- -5'
28997 3' -50.6 NC_006146.1 + 132431 0.66 0.996269
Target:  5'- gGGUGugGAAAAa-GGGGCUgaaacaCGCGAGu -3'
miRNA:   3'- -CCACugCUUUUacUCCCGG------GCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 51467 0.66 0.996269
Target:  5'- aGGUGugGAGAuggGcGGGGgCUGCGGc- -3'
miRNA:   3'- -CCACugCUUUua-C-UCCCgGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 94404 0.66 0.996269
Target:  5'- aGGUGugGGccGUGAGGcUUgGCAGGCc -3'
miRNA:   3'- -CCACugCUuuUACUCCcGGgCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 153385 0.66 0.996208
Target:  5'- uGGUGGcCGGAuuguUGAGGGugccaagggaguuCCCGgGGGCg -3'
miRNA:   3'- -CCACU-GCUUuu--ACUCCC-------------GGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 89765 0.66 0.996208
Target:  5'- aGUGGCGGAAAUcGAggacgagGGGCCCauggccGUGGACg -3'
miRNA:   3'- cCACUGCUUUUA-CU-------CCCGGG------CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 31512 0.66 0.996086
Target:  5'- --cGGCGcc-GUGGGGGCCUucuccuacuaaacaGCAGGCa -3'
miRNA:   3'- ccaCUGCuuuUACUCCCGGG--------------CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 149804 0.66 0.99563
Target:  5'- -----gGGAGAUGGGGGCCa-CAAACa -3'
miRNA:   3'- ccacugCUUUUACUCCCGGgcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 6158 0.66 0.99563
Target:  5'- ---aGCGAAAauaagGUGA-GGCCUGCGGACa -3'
miRNA:   3'- ccacUGCUUU-----UACUcCCGGGCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.