Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28997 | 3' | -50.6 | NC_006146.1 | + | 42672 | 0.66 | 0.997317 |
Target: 5'- --aGGgGAGGGUGAuccGGGC-CGCAGACc -3' miRNA: 3'- ccaCUgCUUUUACU---CCCGgGCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 4574 | 0.66 | 0.994086 |
Target: 5'- -aUGGCGucggccUGGGGaGCCCGCGGGg -3' miRNA: 3'- ccACUGCuuuu--ACUCC-CGGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 124189 | 0.66 | 0.994086 |
Target: 5'- gGGUGACGGAGAagggaGAGGagcacgugcugaGCCUGCucuuuGGCa -3' miRNA: 3'- -CCACUGCUUUUa----CUCC------------CGGGCGu----UUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 41075 | 0.66 | 0.994086 |
Target: 5'- --gGACGggGgcGUGGcGGGUgggCCGCGGGCg -3' miRNA: 3'- ccaCUGCuuU--UACU-CCCG---GGCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 41587 | 0.66 | 0.994086 |
Target: 5'- uGGcUGGcCGAGGcgGAGaGGCCCGgGGGg -3' miRNA: 3'- -CC-ACU-GCUUUuaCUC-CCGGGCgUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 46862 | 0.66 | 0.994828 |
Target: 5'- uGGUaGACGggGAUGuaguugaGGGGCuccuggguguCCGaCGAGCg -3' miRNA: 3'- -CCA-CUGCuuUUAC-------UCCCG----------GGC-GUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 33032 | 0.66 | 0.994906 |
Target: 5'- cGGgcuaGGCGuaggGAGUGAGGGUCaUGUAGGCc -3' miRNA: 3'- -CCa---CUGCu---UUUACUCCCGG-GCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 83638 | 0.66 | 0.994906 |
Target: 5'- uGGUGGCG------GGGGCuCUGCGGGCc -3' miRNA: 3'- -CCACUGCuuuuacUCCCG-GGCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 149804 | 0.66 | 0.99563 |
Target: 5'- -----gGGAGAUGGGGGCCa-CAAACa -3' miRNA: 3'- ccacugCUUUUACUCCCGGgcGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 133435 | 0.66 | 0.994906 |
Target: 5'- uGGUGuuGAGGGUaGGGGGgCUGgGGGCa -3' miRNA: 3'- -CCACugCUUUUA-CUCCCgGGCgUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 83857 | 0.66 | 0.994906 |
Target: 5'- gGGUGGCcaacccAAAGgugGAGgucuGGCCCGCAGAg -3' miRNA: 3'- -CCACUGc-----UUUUa--CUC----CCGGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 54351 | 0.66 | 0.995562 |
Target: 5'- aGGagGACGAGGAgGAGGGCaggggggCCGCuacuACu -3' miRNA: 3'- -CCa-CUGCUUUUaCUCCCG-------GGCGuu--UG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 76082 | 0.66 | 0.997317 |
Target: 5'- aGGUGcUGGAAuuacGGGaGCCCGCcGACa -3' miRNA: 3'- -CCACuGCUUUuac-UCC-CGGGCGuUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 160580 | 0.66 | 0.997317 |
Target: 5'- uGGUuuGCGAGAcUGGGcGGCCUGCcaaGGGCg -3' miRNA: 3'- -CCAc-UGCUUUuACUC-CCGGGCG---UUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 121491 | 0.66 | 0.997271 |
Target: 5'- uGGUGugGAAcacAAUcuguccaGAGGGCaggugcacggccCCGUGAACg -3' miRNA: 3'- -CCACugCUU---UUA-------CUCCCG------------GGCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 131216 | 0.66 | 0.996828 |
Target: 5'- aGGaGGCuGAGGcUGAGcGGCCUGCGGGg -3' miRNA: 3'- -CCaCUG-CUUUuACUC-CCGGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 43654 | 0.66 | 0.996668 |
Target: 5'- --cGAgGAGGcugccgcuccagauGUGGcGGCCCGCAGGCu -3' miRNA: 3'- ccaCUgCUUU--------------UACUcCCGGGCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 46574 | 0.66 | 0.996269 |
Target: 5'- -cUGGCGAGGGacGGGGGCCUGgGGGa -3' miRNA: 3'- ccACUGCUUUUa-CUCCCGGGCgUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 127892 | 0.66 | 0.996269 |
Target: 5'- gGGaGGCGggGAUG-GGGCgCUGCu--- -3' miRNA: 3'- -CCaCUGCuuUUACuCCCG-GGCGuuug -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 163169 | 0.66 | 0.996269 |
Target: 5'- aGGggGAccCGGGAAaGGGGcGCCCGCcAACu -3' miRNA: 3'- -CCa-CU--GCUUUUaCUCC-CGGGCGuUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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