Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28997 | 3' | -50.6 | NC_006146.1 | + | 157481 | 0.67 | 0.992131 |
Target: 5'- cGUGAUGAccg-GGcGGGCCuUGCAGACc -3' miRNA: 3'- cCACUGCUuuuaCU-CCCGG-GCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 59027 | 0.67 | 0.990977 |
Target: 5'- uGGUGAacgcaccgcUGGcgGUGAGGGCgCaGCGGGCc -3' miRNA: 3'- -CCACU---------GCUuuUACUCCCGgG-CGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 154674 | 0.67 | 0.990977 |
Target: 5'- uGGUGGCGggGGgcgcugcugcUGGGuGGUCUGCGc-- -3' miRNA: 3'- -CCACUGCuuUU----------ACUC-CCGGGCGUuug -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 21438 | 0.67 | 0.993164 |
Target: 5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3' miRNA: 3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 27594 | 0.67 | 0.993164 |
Target: 5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3' miRNA: 3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 14262 | 0.67 | 0.992131 |
Target: 5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3' miRNA: 3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 17340 | 0.67 | 0.992131 |
Target: 5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3' miRNA: 3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 23495 | 0.67 | 0.992131 |
Target: 5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3' miRNA: 3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 24516 | 0.67 | 0.993164 |
Target: 5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3' miRNA: 3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 159657 | 0.67 | 0.992131 |
Target: 5'- aGGUGGCcAAGGUGGcGGCCCuCAAGg -3' miRNA: 3'- -CCACUGcUUUUACUcCCGGGcGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 69638 | 0.67 | 0.992131 |
Target: 5'- aGGUGGCGcaGAGGUGGGGucagcgucaGCCUgaccaacuuugGCGAGCa -3' miRNA: 3'- -CCACUGC--UUUUACUCC---------CGGG-----------CGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 116760 | 0.67 | 0.992131 |
Target: 5'- ---uACGugGAUGAGGGgCaCGCGGACg -3' miRNA: 3'- ccacUGCuuUUACUCCCgG-GCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 59346 | 0.67 | 0.989693 |
Target: 5'- gGGUGGCGucccUGAggcGGGCCaGCAGAa -3' miRNA: 3'- -CCACUGCuuuuACU---CCCGGgCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 32013 | 0.67 | 0.989693 |
Target: 5'- uGGUGGCGcg---GGGGGCUguaacucagUGCGGACu -3' miRNA: 3'- -CCACUGCuuuuaCUCCCGG---------GCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 20409 | 0.67 | 0.988272 |
Target: 5'- aGUGGCcaggGGGAcgGAGGGCCUgGCcuGCg -3' miRNA: 3'- cCACUG----CUUUuaCUCCCGGG-CGuuUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 18361 | 0.67 | 0.993164 |
Target: 5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3' miRNA: 3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 15283 | 0.67 | 0.993164 |
Target: 5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3' miRNA: 3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 55261 | 0.67 | 0.993164 |
Target: 5'- cGGcccgGGCGAAGcgGcucguGGGGCUCGCGgugGGCa -3' miRNA: 3'- -CCa---CUGCUUUuaC-----UCCCGGGCGU---UUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 57056 | 0.67 | 0.993164 |
Target: 5'- gGGUugaGGCGGGA--GGGGGCCugaCGCGGAUg -3' miRNA: 3'- -CCA---CUGCUUUuaCUCCCGG---GCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 26573 | 0.67 | 0.992131 |
Target: 5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3' miRNA: 3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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