miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 30734 1.12 0.006639
Target:  5'- gGGUGACGAAAAUGAGGGCCCGCAAACu -3'
miRNA:   3'- -CCACUGCUUUUACUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 52768 0.85 0.307657
Target:  5'- cGGUGACGc---UGAGGGCCgGCGGGCg -3'
miRNA:   3'- -CCACUGCuuuuACUCCCGGgCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 119920 0.78 0.611852
Target:  5'- gGGUGugGAA---GGGGGUCUGCGGGCu -3'
miRNA:   3'- -CCACugCUUuuaCUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 108149 0.78 0.632921
Target:  5'- gGGUGACGuucAUGuGGGUCCGCGGGg -3'
miRNA:   3'- -CCACUGCuuuUACuCCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 59287 0.78 0.643459
Target:  5'- uGGUGACGGAGAggcgaGGGaGGCCCaGCAAGa -3'
miRNA:   3'- -CCACUGCUUUUa----CUC-CCGGG-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 161195 0.77 0.652935
Target:  5'- cGGUGACGGccaggcagGAGGcgacggaGCCCGCGAGCa -3'
miRNA:   3'- -CCACUGCUuuua----CUCC-------CGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 110378 0.77 0.653987
Target:  5'- aGGUGGCGAGAAUu-GGGCCCaGUggGAGCa -3'
miRNA:   3'- -CCACUGCUUUUAcuCCCGGG-CG--UUUG- -5'
28997 3' -50.6 NC_006146.1 + 119950 0.77 0.674979
Target:  5'- aGGUGACGAAGcggcaGAGGGCgCCGCu--- -3'
miRNA:   3'- -CCACUGCUUUua---CUCCCG-GGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 111542 0.77 0.674979
Target:  5'- cGUGGCGAuggaggAGAUGAGGGCCacggCGCAggUg -3'
miRNA:   3'- cCACUGCU------UUUACUCCCGG----GCGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 170414 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 169483 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 168551 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 2167 0.77 0.685424
Target:  5'- cGGaGACGA----GGGGGCCCGUGGACa -3'
miRNA:   3'- -CCaCUGCUuuuaCUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 167619 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 99070 0.76 0.706164
Target:  5'- cGGUGcCGuaguGGUGgAGGGCCCGCAGc- -3'
miRNA:   3'- -CCACuGCuu--UUAC-UCCCGGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 122872 0.76 0.736751
Target:  5'- --cGAUGAGAagGAGGGgCUGCAGACu -3'
miRNA:   3'- ccaCUGCUUUuaCUCCCgGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 91166 0.73 0.855857
Target:  5'- aGGUGACGGAaaugaaggaGAUGAGGGUgCGgCGGGg -3'
miRNA:   3'- -CCACUGCUU---------UUACUCCCGgGC-GUUUg -5'
28997 3' -50.6 NC_006146.1 + 53121 0.73 0.860618
Target:  5'- cGGcgGACGAGGccagcgcccccgGGGGGCCaCGCAGACc -3'
miRNA:   3'- -CCa-CUGCUUUua----------CUCCCGG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 130621 0.73 0.871417
Target:  5'- gGGUGAaGggGGgcaGAGGGgCCGCGAAa -3'
miRNA:   3'- -CCACUgCuuUUa--CUCCCgGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 144825 0.73 0.878858
Target:  5'- gGGUGGCGGAAuuagccuggGUGgaGGGGCCgGCAu-- -3'
miRNA:   3'- -CCACUGCUUU---------UAC--UCCCGGgCGUuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.