miRNA display CGI


Results 21 - 40 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 4837 0.72 0.893037
Target:  5'- --cGGCGggGuauAUGuucuGGGCCCGCAGGg -3'
miRNA:   3'- ccaCUGCuuU---UACu---CCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 11001 0.72 0.893037
Target:  5'- cGGUGACGggGGUcuucuuugacgGAGGGggucuCCCGCGcGACc -3'
miRNA:   3'- -CCACUGCuuUUA-----------CUCCC-----GGGCGU-UUG- -5'
28997 3' -50.6 NC_006146.1 + 54689 0.72 0.895758
Target:  5'- cGGUGGCGuAAAUGAgcucgaggggacggcGGGCCCGggucaGGGCg -3'
miRNA:   3'- -CCACUGCuUUUACU---------------CCCGGGCg----UUUG- -5'
28997 3' -50.6 NC_006146.1 + 164912 0.72 0.91248
Target:  5'- uGGUGACGGAggaGAUGGGGGCgaUGguGAa -3'
miRNA:   3'- -CCACUGCUU---UUACUCCCGg-GCguUUg -5'
28997 3' -50.6 NC_006146.1 + 165166 0.71 0.918462
Target:  5'- uGGaGACGGAggcAAUGAGGGCCC--AGACc -3'
miRNA:   3'- -CCaCUGCUU---UUACUCCCGGGcgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 90528 0.71 0.928051
Target:  5'- uGGUGAUGAAcaaccucccggagcGGUGgagcAGGGCCCGgGAGa -3'
miRNA:   3'- -CCACUGCUU--------------UUAC----UCCCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 137855 0.71 0.929667
Target:  5'- gGGUucCGggGGUGGGGGCuCCaCGAACc -3'
miRNA:   3'- -CCAcuGCuuUUACUCCCG-GGcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 57378 0.71 0.929667
Target:  5'- cGGUGGCGccGGUGGGcuGGCcCCGCGAc- -3'
miRNA:   3'- -CCACUGCuuUUACUC--CCG-GGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 42287 0.71 0.936907
Target:  5'- uGGUGGCGggGAgGAGGagcgggagccggaguGCCCuGCGAGg -3'
miRNA:   3'- -CCACUGCuuUUaCUCC---------------CGGG-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 95616 0.71 0.939858
Target:  5'- uGGUcACGggGAcggcGGGGGCCgGCAAGa -3'
miRNA:   3'- -CCAcUGCuuUUa---CUCCCGGgCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 157083 0.7 0.949046
Target:  5'- uGGUGcUGGAAGgcgGAGGGCagggaGCAGGCg -3'
miRNA:   3'- -CCACuGCUUUUa--CUCCCGgg---CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 30967 0.7 0.952858
Target:  5'- gGGUGGCGGAGGUGguggcggGGGuGCCCcggguacaguuuGCGGGCc -3'
miRNA:   3'- -CCACUGCUUUUAC-------UCC-CGGG------------CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 12556 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 15635 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 18713 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 24869 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 27947 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 21791 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 125576 0.7 0.960992
Target:  5'- gGGUGAC---AAUGGGaaCCCGCAGGCa -3'
miRNA:   3'- -CCACUGcuuUUACUCccGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 156928 0.7 0.960992
Target:  5'- gGGUGGCGgcGcUGAcGGGCuCCGCu-ACg -3'
miRNA:   3'- -CCACUGCuuUuACU-CCCG-GGCGuuUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.