miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 125576 0.7 0.960992
Target:  5'- gGGUGAC---AAUGGGaaCCCGCAGGCa -3'
miRNA:   3'- -CCACUGcuuUUACUCccGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 155218 0.69 0.965842
Target:  5'- cGUGAUGAAGGUGuacaggcugugggucAGGGCgUGCAggUg -3'
miRNA:   3'- cCACUGCUUUUAC---------------UCCCGgGCGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 116098 0.69 0.967785
Target:  5'- uGGUGGCGGccacccGAGGGucCCCGUAAAa -3'
miRNA:   3'- -CCACUGCUuuua--CUCCC--GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 86157 0.69 0.967785
Target:  5'- uGG-GACGGAGGcgccucgcuUGGGGGgggcaaaguCCCGCAGGCc -3'
miRNA:   3'- -CCaCUGCUUUU---------ACUCCC---------GGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 52076 0.69 0.970846
Target:  5'- -aUGACGGGAGggcugcggucGGGGGCCgGCGAGg -3'
miRNA:   3'- ccACUGCUUUUa---------CUCCCGGgCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 164626 0.69 0.970846
Target:  5'- gGGUGugGuAGAUGAucGGGgUCGcCAGACg -3'
miRNA:   3'- -CCACugCuUUUACU--CCCgGGC-GUUUG- -5'
28997 3' -50.6 NC_006146.1 + 138318 0.69 0.970846
Target:  5'- cGUGugGggGAgGAGcuaaGGUCCGCGAGa -3'
miRNA:   3'- cCACugCuuUUaCUC----CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 47567 0.69 0.970846
Target:  5'- --cGGCGAGAccccUGAcGGCCCcGCAGACg -3'
miRNA:   3'- ccaCUGCUUUu---ACUcCCGGG-CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 131086 0.69 0.973692
Target:  5'- cGGUGugGGcguagcaGGGGGCCUGCu--- -3'
miRNA:   3'- -CCACugCUuuua---CUCCCGGGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 55545 0.69 0.973692
Target:  5'- cGGUGGCGggGGcugGAGGcGaCCGCGGc- -3'
miRNA:   3'- -CCACUGCuuUUa--CUCC-CgGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 36820 0.69 0.973692
Target:  5'- uGUGGCaGAauuuaaAAGUGGGGGCCCGgGu-- -3'
miRNA:   3'- cCACUG-CU------UUUACUCCCGGGCgUuug -5'
28997 3' -50.6 NC_006146.1 + 56753 0.69 0.976332
Target:  5'- -cUGACGGAGGUGGacgggggccuGGCCCGCGuGACg -3'
miRNA:   3'- ccACUGCUUUUACUc---------CCGGGCGU-UUG- -5'
28997 3' -50.6 NC_006146.1 + 147327 0.69 0.977331
Target:  5'- --cGGcCGAGAAUGgcggccugcgcgucuGGGGCCCGCuGAGCc -3'
miRNA:   3'- ccaCU-GCUUUUAC---------------UCCCGGGCG-UUUG- -5'
28997 3' -50.6 NC_006146.1 + 44472 0.68 0.980366
Target:  5'- cGGUGGuCGGugggcacaccccGGGGCCCGCAGGg -3'
miRNA:   3'- -CCACU-GCUuuuac-------UCCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 53838 0.68 0.981021
Target:  5'- --gGGCGAAGGUGuGGuCCCGgAGGCg -3'
miRNA:   3'- ccaCUGCUUUUACuCCcGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 63665 0.68 0.981021
Target:  5'- ---cACGGAGAUGgaccaGGGGCCCGUucACa -3'
miRNA:   3'- ccacUGCUUUUAC-----UCCCGGGCGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 44741 0.68 0.982888
Target:  5'- cGGUGgccgcggGCGGcuGUGguugucGGGGCCCgGCGGGCg -3'
miRNA:   3'- -CCAC-------UGCUuuUAC------UCCCGGG-CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 57456 0.68 0.982888
Target:  5'- cGGUGcuccgGggGAUGGccuugcugaccacGGGCCCGUGGACc -3'
miRNA:   3'- -CCACug---CuuUUACU-------------CCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 53433 0.68 0.983086
Target:  5'- --aGACGAGGAggaggGAGaaagagagggaaGGCCCGCGGAg -3'
miRNA:   3'- ccaCUGCUUUUa----CUC------------CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 86534 0.68 0.983086
Target:  5'- cGUGAaGGAuGUGAGGGCCCuGaucaAGACc -3'
miRNA:   3'- cCACUgCUUuUACUCCCGGG-Cg---UUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.