miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 149804 0.66 0.99563
Target:  5'- -----gGGAGAUGGGGGCCa-CAAACa -3'
miRNA:   3'- ccacugCUUUUACUCCCGGgcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 54351 0.66 0.995562
Target:  5'- aGGagGACGAGGAgGAGGGCaggggggCCGCuacuACu -3'
miRNA:   3'- -CCa-CUGCUUUUaCUCCCG-------GGCGuu--UG- -5'
28997 3' -50.6 NC_006146.1 + 33032 0.66 0.994906
Target:  5'- cGGgcuaGGCGuaggGAGUGAGGGUCaUGUAGGCc -3'
miRNA:   3'- -CCa---CUGCu---UUUACUCCCGG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 83638 0.66 0.994906
Target:  5'- uGGUGGCG------GGGGCuCUGCGGGCc -3'
miRNA:   3'- -CCACUGCuuuuacUCCCG-GGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 83857 0.66 0.994906
Target:  5'- gGGUGGCcaacccAAAGgugGAGgucuGGCCCGCAGAg -3'
miRNA:   3'- -CCACUGc-----UUUUa--CUC----CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 133435 0.66 0.994906
Target:  5'- uGGUGuuGAGGGUaGGGGGgCUGgGGGCa -3'
miRNA:   3'- -CCACugCUUUUA-CUCCCgGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 46862 0.66 0.994828
Target:  5'- uGGUaGACGggGAUGuaguugaGGGGCuccuggguguCCGaCGAGCg -3'
miRNA:   3'- -CCA-CUGCuuUUAC-------UCCCG----------GGC-GUUUG- -5'
28997 3' -50.6 NC_006146.1 + 41587 0.66 0.994086
Target:  5'- uGGcUGGcCGAGGcgGAGaGGCCCGgGGGg -3'
miRNA:   3'- -CC-ACU-GCUUUuaCUC-CCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 4574 0.66 0.994086
Target:  5'- -aUGGCGucggccUGGGGaGCCCGCGGGg -3'
miRNA:   3'- ccACUGCuuuu--ACUCC-CGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 124189 0.66 0.994086
Target:  5'- gGGUGACGGAGAagggaGAGGagcacgugcugaGCCUGCucuuuGGCa -3'
miRNA:   3'- -CCACUGCUUUUa----CUCC------------CGGGCGu----UUG- -5'
28997 3' -50.6 NC_006146.1 + 41075 0.66 0.994086
Target:  5'- --gGACGggGgcGUGGcGGGUgggCCGCGGGCg -3'
miRNA:   3'- ccaCUGCuuU--UACU-CCCG---GGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 39812 0.67 0.993546
Target:  5'- aGGUGugGAcuAGcgGGGGGUaggcuaccccuuccuCCGCGuuGGCg -3'
miRNA:   3'- -CCACugCU--UUuaCUCCCG---------------GGCGU--UUG- -5'
28997 3' -50.6 NC_006146.1 + 57056 0.67 0.993164
Target:  5'- gGGUugaGGCGGGA--GGGGGCCugaCGCGGAUg -3'
miRNA:   3'- -CCA---CUGCUUUuaCUCCCGG---GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 39262 0.67 0.993164
Target:  5'- -cUGAgGAAcgGGUGuGGGCCC-CGGACu -3'
miRNA:   3'- ccACUgCUU--UUACuCCCGGGcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 44527 0.67 0.993164
Target:  5'- aGGcUGACGGGcggaggacGGUGGGGGgCUGCGgugGACu -3'
miRNA:   3'- -CC-ACUGCUU--------UUACUCCCgGGCGU---UUG- -5'
28997 3' -50.6 NC_006146.1 + 27594 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 18361 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 15283 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 24516 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 21438 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.