miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 18361 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 157481 0.67 0.992131
Target:  5'- cGUGAUGAccg-GGcGGGCCuUGCAGACc -3'
miRNA:   3'- cCACUGCUuuuaCU-CCCGG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 29651 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 14262 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 17340 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 23495 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 26573 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 116760 0.67 0.992131
Target:  5'- ---uACGugGAUGAGGGgCaCGCGGACg -3'
miRNA:   3'- ccacUGCuuUUACUCCCgG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 69638 0.67 0.992131
Target:  5'- aGGUGGCGcaGAGGUGGGGucagcgucaGCCUgaccaacuuugGCGAGCa -3'
miRNA:   3'- -CCACUGC--UUUUACUCC---------CGGG-----------CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 159657 0.67 0.992131
Target:  5'- aGGUGGCcAAGGUGGcGGCCCuCAAGg -3'
miRNA:   3'- -CCACUGcUUUUACUcCCGGGcGUUUg -5'
28997 3' -50.6 NC_006146.1 + 154674 0.67 0.990977
Target:  5'- uGGUGGCGggGGgcgcugcugcUGGGuGGUCUGCGc-- -3'
miRNA:   3'- -CCACUGCuuUU----------ACUC-CCGGGCGUuug -5'
28997 3' -50.6 NC_006146.1 + 59027 0.67 0.990977
Target:  5'- uGGUGAacgcaccgcUGGcgGUGAGGGCgCaGCGGGCc -3'
miRNA:   3'- -CCACU---------GCUuuUACUCCCGgG-CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 59346 0.67 0.989693
Target:  5'- gGGUGGCGucccUGAggcGGGCCaGCAGAa -3'
miRNA:   3'- -CCACUGCuuuuACU---CCCGGgCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 32013 0.67 0.989693
Target:  5'- uGGUGGCGcg---GGGGGCUguaacucagUGCGGACu -3'
miRNA:   3'- -CCACUGCuuuuaCUCCCGG---------GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 159973 0.67 0.988272
Target:  5'- aGGUGGCGcgc---AGGaGCCCGCAGu- -3'
miRNA:   3'- -CCACUGCuuuuacUCC-CGGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 113664 0.67 0.988272
Target:  5'- uGGUcGACGAGAgGUGGcucGGGCCCGgGc-- -3'
miRNA:   3'- -CCA-CUGCUUU-UACU---CCCGGGCgUuug -5'
28997 3' -50.6 NC_006146.1 + 20409 0.67 0.988272
Target:  5'- aGUGGCcaggGGGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- cCACUG----CUUUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 99026 0.67 0.988272
Target:  5'- cGUGACGGccGUGuagaggccccccAGGGCCCgGCGggUg -3'
miRNA:   3'- cCACUGCUuuUAC------------UCCCGGG-CGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 170602 0.67 0.988272
Target:  5'- cGUGGCGAGcgcgccGGGCCCGCc--- -3'
miRNA:   3'- cCACUGCUUuuacu-CCCGGGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 89683 0.67 0.988272
Target:  5'- --cGACGGAA---GGGGCCCGgGGAa -3'
miRNA:   3'- ccaCUGCUUUuacUCCCGGGCgUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.