miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 2167 0.77 0.685424
Target:  5'- cGGaGACGA----GGGGGCCCGUGGACa -3'
miRNA:   3'- -CCaCUGCUuuuaCUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 4574 0.66 0.994086
Target:  5'- -aUGGCGucggccUGGGGaGCCCGCGGGg -3'
miRNA:   3'- ccACUGCuuuu--ACUCC-CGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 4837 0.72 0.893037
Target:  5'- --cGGCGggGuauAUGuucuGGGCCCGCAGGg -3'
miRNA:   3'- ccaCUGCuuU---UACu---CCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 6158 0.66 0.99563
Target:  5'- ---aGCGAAAauaagGUGA-GGCCUGCGGACa -3'
miRNA:   3'- ccacUGCUUU-----UACUcCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 11001 0.72 0.893037
Target:  5'- cGGUGACGggGGUcuucuuugacgGAGGGggucuCCCGCGcGACc -3'
miRNA:   3'- -CCACUGCuuUUA-----------CUCCC-----GGGCGU-UUG- -5'
28997 3' -50.6 NC_006146.1 + 12556 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 14262 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 15283 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 15635 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 17340 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 18361 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 18713 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 20409 0.67 0.988272
Target:  5'- aGUGGCcaggGGGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- cCACUG----CUUUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 21438 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 21791 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 23495 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 24516 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 24869 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 26573 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 27594 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.