miRNA display CGI


Results 21 - 40 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 27947 0.7 0.953269
Target:  5'- uGGagGACGggGAcgcgGAGGGCCUG-AGGCc -3'
miRNA:   3'- -CCa-CUGCuuUUa---CUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 29651 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 30734 1.12 0.006639
Target:  5'- gGGUGACGAAAAUGAGGGCCCGCAAACu -3'
miRNA:   3'- -CCACUGCUUUUACUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 30967 0.7 0.952858
Target:  5'- gGGUGGCGGAGGUGguggcggGGGuGCCCcggguacaguuuGCGGGCc -3'
miRNA:   3'- -CCACUGCUUUUAC-------UCC-CGGG------------CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 31512 0.66 0.996086
Target:  5'- --cGGCGcc-GUGGGGGCCUucuccuacuaaacaGCAGGCa -3'
miRNA:   3'- ccaCUGCuuuUACUCCCGGG--------------CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 32013 0.67 0.989693
Target:  5'- uGGUGGCGcg---GGGGGCUguaacucagUGCGGACu -3'
miRNA:   3'- -CCACUGCuuuuaCUCCCGG---------GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 32355 0.68 0.984977
Target:  5'- gGGUGGCuGAGcUGAGcGGCCUGCc-ACg -3'
miRNA:   3'- -CCACUGcUUUuACUC-CCGGGCGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 33032 0.66 0.994906
Target:  5'- cGGgcuaGGCGuaggGAGUGAGGGUCaUGUAGGCc -3'
miRNA:   3'- -CCa---CUGCu---UUUACUCCCGG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 36820 0.69 0.973692
Target:  5'- uGUGGCaGAauuuaaAAGUGGGGGCCCGgGu-- -3'
miRNA:   3'- cCACUG-CU------UUUACUCCCGGGCgUuug -5'
28997 3' -50.6 NC_006146.1 + 39023 0.66 0.996776
Target:  5'- uGUGuCGcAAcccaaacAUGGGGGCCaGCAGGCa -3'
miRNA:   3'- cCACuGCuUU-------UACUCCCGGgCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 39262 0.67 0.993164
Target:  5'- -cUGAgGAAcgGGUGuGGGCCC-CGGACu -3'
miRNA:   3'- ccACUgCUU--UUACuCCCGGGcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 39812 0.67 0.993546
Target:  5'- aGGUGugGAcuAGcgGGGGGUaggcuaccccuuccuCCGCGuuGGCg -3'
miRNA:   3'- -CCACugCU--UUuaCUCCCG---------------GGCGU--UUG- -5'
28997 3' -50.6 NC_006146.1 + 41075 0.66 0.994086
Target:  5'- --gGACGggGgcGUGGcGGGUgggCCGCGGGCg -3'
miRNA:   3'- ccaCUGCuuU--UACU-CCCG---GGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 41587 0.66 0.994086
Target:  5'- uGGcUGGcCGAGGcgGAGaGGCCCGgGGGg -3'
miRNA:   3'- -CC-ACU-GCUUUuaCUC-CCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 42287 0.71 0.936907
Target:  5'- uGGUGGCGggGAgGAGGagcgggagccggaguGCCCuGCGAGg -3'
miRNA:   3'- -CCACUGCuuUUaCUCC---------------CGGG-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 42672 0.66 0.997317
Target:  5'- --aGGgGAGGGUGAuccGGGC-CGCAGACc -3'
miRNA:   3'- ccaCUgCUUUUACU---CCCGgGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 43654 0.66 0.996668
Target:  5'- --cGAgGAGGcugccgcuccagauGUGGcGGCCCGCAGGCu -3'
miRNA:   3'- ccaCUgCUUU--------------UACUcCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 44472 0.68 0.980366
Target:  5'- cGGUGGuCGGugggcacaccccGGGGCCCGCAGGg -3'
miRNA:   3'- -CCACU-GCUuuuac-------UCCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 44527 0.67 0.993164
Target:  5'- aGGcUGACGGGcggaggacGGUGGGGGgCUGCGgugGACu -3'
miRNA:   3'- -CC-ACUGCUU--------UUACUCCCgGGCGU---UUG- -5'
28997 3' -50.6 NC_006146.1 + 44741 0.68 0.982888
Target:  5'- cGGUGgccgcggGCGGcuGUGguugucGGGGCCCgGCGGGCg -3'
miRNA:   3'- -CCAC-------UGCUuuUAC------UCCCGGG-CGUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.