miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 46574 0.66 0.996269
Target:  5'- -cUGGCGAGGGacGGGGGCCUGgGGGa -3'
miRNA:   3'- ccACUGCUUUUa-CUCCCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 46862 0.66 0.994828
Target:  5'- uGGUaGACGggGAUGuaguugaGGGGCuccuggguguCCGaCGAGCg -3'
miRNA:   3'- -CCA-CUGCuuUUAC-------UCCCG----------GGC-GUUUG- -5'
28997 3' -50.6 NC_006146.1 + 47567 0.69 0.970846
Target:  5'- --cGGCGAGAccccUGAcGGCCCcGCAGACg -3'
miRNA:   3'- ccaCUGCUUUu---ACUcCCGGG-CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 48005 0.68 0.984977
Target:  5'- uGGUGGCGGGAGgcuuggcggGGGaGGCaCgGCGGGCc -3'
miRNA:   3'- -CCACUGCUUUUa--------CUC-CCG-GgCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 51467 0.66 0.996269
Target:  5'- aGGUGugGAGAuggGcGGGGgCUGCGGc- -3'
miRNA:   3'- -CCACugCUUUua-C-UCCCgGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 52076 0.69 0.970846
Target:  5'- -aUGACGGGAGggcugcggucGGGGGCCgGCGAGg -3'
miRNA:   3'- ccACUGCUUUUa---------CUCCCGGgCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 52768 0.85 0.307657
Target:  5'- cGGUGACGc---UGAGGGCCgGCGGGCg -3'
miRNA:   3'- -CCACUGCuuuuACUCCCGGgCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 53121 0.73 0.860618
Target:  5'- cGGcgGACGAGGccagcgcccccgGGGGGCCaCGCAGACc -3'
miRNA:   3'- -CCa-CUGCUUUua----------CUCCCGG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 53433 0.68 0.983086
Target:  5'- --aGACGAGGAggaggGAGaaagagagggaaGGCCCGCGGAg -3'
miRNA:   3'- ccaCUGCUUUUa----CUC------------CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 53838 0.68 0.981021
Target:  5'- --gGGCGAAGGUGuGGuCCCGgAGGCg -3'
miRNA:   3'- ccaCUGCUUUUACuCCcGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 54351 0.66 0.995562
Target:  5'- aGGagGACGAGGAgGAGGGCaggggggCCGCuacuACu -3'
miRNA:   3'- -CCa-CUGCUUUUaCUCCCG-------GGCGuu--UG- -5'
28997 3' -50.6 NC_006146.1 + 54689 0.72 0.895758
Target:  5'- cGGUGGCGuAAAUGAgcucgaggggacggcGGGCCCGggucaGGGCg -3'
miRNA:   3'- -CCACUGCuUUUACU---------------CCCGGGCg----UUUG- -5'
28997 3' -50.6 NC_006146.1 + 55261 0.67 0.993164
Target:  5'- cGGcccgGGCGAAGcgGcucguGGGGCUCGCGgugGGCa -3'
miRNA:   3'- -CCa---CUGCUUUuaC-----UCCCGGGCGU---UUG- -5'
28997 3' -50.6 NC_006146.1 + 55545 0.69 0.973692
Target:  5'- cGGUGGCGggGGcugGAGGcGaCCGCGGc- -3'
miRNA:   3'- -CCACUGCuuUUa--CUCC-CgGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 56121 0.68 0.986703
Target:  5'- --aGGCGAAGGUGGccgcGGGCCC-CGAGa -3'
miRNA:   3'- ccaCUGCUUUUACU----CCCGGGcGUUUg -5'
28997 3' -50.6 NC_006146.1 + 56753 0.69 0.976332
Target:  5'- -cUGACGGAGGUGGacgggggccuGGCCCGCGuGACg -3'
miRNA:   3'- ccACUGCUUUUACUc---------CCGGGCGU-UUG- -5'
28997 3' -50.6 NC_006146.1 + 57056 0.67 0.993164
Target:  5'- gGGUugaGGCGGGA--GGGGGCCugaCGCGGAUg -3'
miRNA:   3'- -CCA---CUGCUUUuaCUCCCGG---GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 57378 0.71 0.929667
Target:  5'- cGGUGGCGccGGUGGGcuGGCcCCGCGAc- -3'
miRNA:   3'- -CCACUGCuuUUACUC--CCG-GGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 57456 0.68 0.982888
Target:  5'- cGGUGcuccgGggGAUGGccuugcugaccacGGGCCCGUGGACc -3'
miRNA:   3'- -CCACug---CuuUUACU-------------CCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 59027 0.67 0.990977
Target:  5'- uGGUGAacgcaccgcUGGcgGUGAGGGCgCaGCGGGCc -3'
miRNA:   3'- -CCACU---------GCUuuUACUCCCGgG-CGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.