miRNA display CGI


Results 1 - 20 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 170602 0.67 0.988272
Target:  5'- cGUGGCGAGcgcgccGGGCCCGCc--- -3'
miRNA:   3'- cCACUGCUUuuacu-CCCGGGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 170414 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 169483 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 168551 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 167649 0.68 0.986703
Target:  5'- --cGGCGcguGccGGGGGCCCGgGGGCg -3'
miRNA:   3'- ccaCUGCuu-UuaCUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 167619 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 165166 0.71 0.918462
Target:  5'- uGGaGACGGAggcAAUGAGGGCCC--AGACc -3'
miRNA:   3'- -CCaCUGCUU---UUACUCCCGGGcgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 164912 0.72 0.91248
Target:  5'- uGGUGACGGAggaGAUGGGGGCgaUGguGAa -3'
miRNA:   3'- -CCACUGCUU---UUACUCCCGg-GCguUUg -5'
28997 3' -50.6 NC_006146.1 + 164626 0.69 0.970846
Target:  5'- gGGUGugGuAGAUGAucGGGgUCGcCAGACg -3'
miRNA:   3'- -CCACugCuUUUACU--CCCgGGC-GUUUG- -5'
28997 3' -50.6 NC_006146.1 + 163169 0.66 0.996269
Target:  5'- aGGggGAccCGGGAAaGGGGcGCCCGCcAACu -3'
miRNA:   3'- -CCa-CU--GCUUUUaCUCC-CGGGCGuUUG- -5'
28997 3' -50.6 NC_006146.1 + 161195 0.77 0.652935
Target:  5'- cGGUGACGGccaggcagGAGGcgacggaGCCCGCGAGCa -3'
miRNA:   3'- -CCACUGCUuuua----CUCC-------CGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 160580 0.66 0.997317
Target:  5'- uGGUuuGCGAGAcUGGGcGGCCUGCcaaGGGCg -3'
miRNA:   3'- -CCAc-UGCUUUuACUC-CCGGGCG---UUUG- -5'
28997 3' -50.6 NC_006146.1 + 160432 0.68 0.984977
Target:  5'- uGG-GACGggGAggcccGGGGCgauacCCGCGGGCa -3'
miRNA:   3'- -CCaCUGCuuUUac---UCCCG-----GGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 159973 0.67 0.988272
Target:  5'- aGGUGGCGcgc---AGGaGCCCGCAGu- -3'
miRNA:   3'- -CCACUGCuuuuacUCC-CGGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 159657 0.67 0.992131
Target:  5'- aGGUGGCcAAGGUGGcGGCCCuCAAGg -3'
miRNA:   3'- -CCACUGcUUUUACUcCCGGGcGUUUg -5'
28997 3' -50.6 NC_006146.1 + 157932 0.68 0.983086
Target:  5'- aGGUGuuGAGGAauuucaUGuAGGGCCCGUuAAUg -3'
miRNA:   3'- -CCACugCUUUU------AC-UCCCGGGCGuUUG- -5'
28997 3' -50.6 NC_006146.1 + 157481 0.67 0.992131
Target:  5'- cGUGAUGAccg-GGcGGGCCuUGCAGACc -3'
miRNA:   3'- cCACUGCUuuuaCU-CCCGG-GCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 157083 0.7 0.949046
Target:  5'- uGGUGcUGGAAGgcgGAGGGCagggaGCAGGCg -3'
miRNA:   3'- -CCACuGCUUUUa--CUCCCGgg---CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 156928 0.7 0.960992
Target:  5'- gGGUGGCGgcGcUGAcGGGCuCCGCu-ACg -3'
miRNA:   3'- -CCACUGCuuUuACU-CCCG-GGCGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 155798 0.66 0.996828
Target:  5'- cGGUGGCcc---UGGGGGCCaccgaGuCAAACa -3'
miRNA:   3'- -CCACUGcuuuuACUCCCGGg----C-GUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.