miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 155218 0.69 0.965842
Target:  5'- cGUGAUGAAGGUGuacaggcugugggucAGGGCgUGCAggUg -3'
miRNA:   3'- cCACUGCUUUUAC---------------UCCCGgGCGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 154674 0.67 0.990977
Target:  5'- uGGUGGCGggGGgcgcugcugcUGGGuGGUCUGCGc-- -3'
miRNA:   3'- -CCACUGCuuUU----------ACUC-CCGGGCGUuug -5'
28997 3' -50.6 NC_006146.1 + 153385 0.66 0.996208
Target:  5'- uGGUGGcCGGAuuguUGAGGGugccaagggaguuCCCGgGGGCg -3'
miRNA:   3'- -CCACU-GCUUuu--ACUCCC-------------GGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 149963 0.66 0.99563
Target:  5'- aGGcGuuGGGAGUGGGGGCCaggGCcuGCa -3'
miRNA:   3'- -CCaCugCUUUUACUCCCGGg--CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 149834 0.66 0.997317
Target:  5'- uGGUGugGGcgGccAGGGCCUcgGCGAAg -3'
miRNA:   3'- -CCACugCUuuUacUCCCGGG--CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 149804 0.66 0.99563
Target:  5'- -----gGGAGAUGGGGGCCa-CAAACa -3'
miRNA:   3'- ccacugCUUUUACUCCCGGgcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 147327 0.69 0.977331
Target:  5'- --cGGcCGAGAAUGgcggccugcgcgucuGGGGCCCGCuGAGCc -3'
miRNA:   3'- ccaCU-GCUUUUAC---------------UCCCGGGCG-UUUG- -5'
28997 3' -50.6 NC_006146.1 + 144825 0.73 0.878858
Target:  5'- gGGUGGCGGAAuuagccuggGUGgaGGGGCCgGCAu-- -3'
miRNA:   3'- -CCACUGCUUU---------UAC--UCCCGGgCGUuug -5'
28997 3' -50.6 NC_006146.1 + 138318 0.69 0.970846
Target:  5'- cGUGugGggGAgGAGcuaaGGUCCGCGAGa -3'
miRNA:   3'- cCACugCuuUUaCUC----CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 137855 0.71 0.929667
Target:  5'- gGGUucCGggGGUGGGGGCuCCaCGAACc -3'
miRNA:   3'- -CCAcuGCuuUUACUCCCG-GGcGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 133435 0.66 0.994906
Target:  5'- uGGUGuuGAGGGUaGGGGGgCUGgGGGCa -3'
miRNA:   3'- -CCACugCUUUUA-CUCCCgGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 132431 0.66 0.996269
Target:  5'- gGGUGugGAAAAa-GGGGCUgaaacaCGCGAGu -3'
miRNA:   3'- -CCACugCUUUUacUCCCGG------GCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 131216 0.66 0.996828
Target:  5'- aGGaGGCuGAGGcUGAGcGGCCUGCGGGg -3'
miRNA:   3'- -CCaCUG-CUUUuACUC-CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 131086 0.69 0.973692
Target:  5'- cGGUGugGGcguagcaGGGGGCCUGCu--- -3'
miRNA:   3'- -CCACugCUuuua---CUCCCGGGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 130621 0.73 0.871417
Target:  5'- gGGUGAaGggGGgcaGAGGGgCCGCGAAa -3'
miRNA:   3'- -CCACUgCuuUUa--CUCCCgGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 127892 0.66 0.996269
Target:  5'- gGGaGGCGggGAUG-GGGCgCUGCu--- -3'
miRNA:   3'- -CCaCUGCuuUUACuCCCG-GGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 125576 0.7 0.960992
Target:  5'- gGGUGAC---AAUGGGaaCCCGCAGGCa -3'
miRNA:   3'- -CCACUGcuuUUACUCccGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 124189 0.66 0.994086
Target:  5'- gGGUGACGGAGAagggaGAGGagcacgugcugaGCCUGCucuuuGGCa -3'
miRNA:   3'- -CCACUGCUUUUa----CUCC------------CGGGCGu----UUG- -5'
28997 3' -50.6 NC_006146.1 + 122872 0.76 0.736751
Target:  5'- --cGAUGAGAagGAGGGgCUGCAGACu -3'
miRNA:   3'- ccaCUGCUUUuaCUCCCgGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 121491 0.66 0.997271
Target:  5'- uGGUGugGAAcacAAUcuguccaGAGGGCaggugcacggccCCGUGAACg -3'
miRNA:   3'- -CCACugCUU---UUA-------CUCCCG------------GGCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.