miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 30734 1.12 0.006639
Target:  5'- gGGUGACGAAAAUGAGGGCCCGCAAACu -3'
miRNA:   3'- -CCACUGCUUUUACUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 155218 0.69 0.965842
Target:  5'- cGUGAUGAAGGUGuacaggcugugggucAGGGCgUGCAggUg -3'
miRNA:   3'- cCACUGCUUUUAC---------------UCCCGgGCGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 47567 0.69 0.970846
Target:  5'- --cGGCGAGAccccUGAcGGCCCcGCAGACg -3'
miRNA:   3'- ccaCUGCUUUu---ACUcCCGGG-CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 149834 0.66 0.997317
Target:  5'- uGGUGugGGcgGccAGGGCCUcgGCGAAg -3'
miRNA:   3'- -CCACugCUuuUacUCCCGGG--CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 168551 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 169483 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 99070 0.76 0.706164
Target:  5'- cGGUGcCGuaguGGUGgAGGGCCCGCAGc- -3'
miRNA:   3'- -CCACuGCuu--UUAC-UCCCGGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 91166 0.73 0.855857
Target:  5'- aGGUGACGGAaaugaaggaGAUGAGGGUgCGgCGGGg -3'
miRNA:   3'- -CCACUGCUU---------UUACUCCCGgGC-GUUUg -5'
28997 3' -50.6 NC_006146.1 + 90528 0.71 0.928051
Target:  5'- uGGUGAUGAAcaaccucccggagcGGUGgagcAGGGCCCGgGAGa -3'
miRNA:   3'- -CCACUGCUU--------------UUAC----UCCCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 117599 0.7 0.960992
Target:  5'- gGGUGACaGAGAAccuUGAGGGCauuCUGUAAGu -3'
miRNA:   3'- -CCACUG-CUUUU---ACUCCCG---GGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 42287 0.71 0.936907
Target:  5'- uGGUGGCGggGAgGAGGagcgggagccggaguGCCCuGCGAGg -3'
miRNA:   3'- -CCACUGCuuUUaCUCC---------------CGGG-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 54689 0.72 0.895758
Target:  5'- cGGUGGCGuAAAUGAgcucgaggggacggcGGGCCCGggucaGGGCg -3'
miRNA:   3'- -CCACUGCuUUUACU---------------CCCGGGCg----UUUG- -5'
28997 3' -50.6 NC_006146.1 + 108149 0.78 0.632921
Target:  5'- gGGUGACGuucAUGuGGGUCCGCGGGg -3'
miRNA:   3'- -CCACUGCuuuUACuCCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 125576 0.7 0.960992
Target:  5'- gGGUGAC---AAUGGGaaCCCGCAGGCa -3'
miRNA:   3'- -CCACUGcuuUUACUCccGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 110378 0.77 0.653987
Target:  5'- aGGUGGCGAGAAUu-GGGCCCaGUggGAGCa -3'
miRNA:   3'- -CCACUGCUUUUAcuCCCGGG-CG--UUUG- -5'
28997 3' -50.6 NC_006146.1 + 11001 0.72 0.893037
Target:  5'- cGGUGACGggGGUcuucuuugacgGAGGGggucuCCCGCGcGACc -3'
miRNA:   3'- -CCACUGCuuUUA-----------CUCCC-----GGGCGU-UUG- -5'
28997 3' -50.6 NC_006146.1 + 156928 0.7 0.960992
Target:  5'- gGGUGGCGgcGcUGAcGGGCuCCGCu-ACg -3'
miRNA:   3'- -CCACUGCuuUuACU-CCCG-GGCGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 116098 0.69 0.967785
Target:  5'- uGGUGGCGGccacccGAGGGucCCCGUAAAa -3'
miRNA:   3'- -CCACUGCUuuua--CUCCC--GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 167619 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 170414 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.