Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28997 | 3' | -50.6 | NC_006146.1 | + | 52076 | 0.69 | 0.970846 |
Target: 5'- -aUGACGGGAGggcugcggucGGGGGCCgGCGAGg -3' miRNA: 3'- ccACUGCUUUUa---------CUCCCGGgCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 47567 | 0.69 | 0.970846 |
Target: 5'- --cGGCGAGAccccUGAcGGCCCcGCAGACg -3' miRNA: 3'- ccaCUGCUUUu---ACUcCCGGG-CGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 54689 | 0.72 | 0.895758 |
Target: 5'- cGGUGGCGuAAAUGAgcucgaggggacggcGGGCCCGggucaGGGCg -3' miRNA: 3'- -CCACUGCuUUUACU---------------CCCGGGCg----UUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 167619 | 0.77 | 0.685424 |
Target: 5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3' miRNA: 3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 170602 | 0.67 | 0.988272 |
Target: 5'- cGUGGCGAGcgcgccGGGCCCGCc--- -3' miRNA: 3'- cCACUGCUUuuacu-CCCGGGCGuuug -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 48005 | 0.68 | 0.984977 |
Target: 5'- uGGUGGCGGGAGgcuuggcggGGGaGGCaCgGCGGGCc -3' miRNA: 3'- -CCACUGCUUUUa--------CUC-CCG-GgCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 155218 | 0.69 | 0.965842 |
Target: 5'- cGUGAUGAAGGUGuacaggcugugggucAGGGCgUGCAggUg -3' miRNA: 3'- cCACUGCUUUUAC---------------UCCCGgGCGUuuG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 110378 | 0.77 | 0.653987 |
Target: 5'- aGGUGGCGAGAAUu-GGGCCCaGUggGAGCa -3' miRNA: 3'- -CCACUGCUUUUAcuCCCGGG-CG--UUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 94769 | 0.68 | 0.983086 |
Target: 5'- -uUGAUGAA---GAGGGCCCaguuGCGGGCc -3' miRNA: 3'- ccACUGCUUuuaCUCCCGGG----CGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 108149 | 0.78 | 0.632921 |
Target: 5'- gGGUGACGuucAUGuGGGUCCGCGGGg -3' miRNA: 3'- -CCACUGCuuuUACuCCCGGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 116098 | 0.69 | 0.967785 |
Target: 5'- uGGUGGCGGccacccGAGGGucCCCGUAAAa -3' miRNA: 3'- -CCACUGCUuuua--CUCCC--GGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 53838 | 0.68 | 0.981021 |
Target: 5'- --gGGCGAAGGUGuGGuCCCGgAGGCg -3' miRNA: 3'- ccaCUGCUUUUACuCCcGGGCgUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 125576 | 0.7 | 0.960992 |
Target: 5'- gGGUGAC---AAUGGGaaCCCGCAGGCa -3' miRNA: 3'- -CCACUGcuuUUACUCccGGGCGUUUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 90528 | 0.71 | 0.928051 |
Target: 5'- uGGUGAUGAAcaaccucccggagcGGUGgagcAGGGCCCGgGAGa -3' miRNA: 3'- -CCACUGCUU--------------UUAC----UCCCGGGCgUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 99070 | 0.76 | 0.706164 |
Target: 5'- cGGUGcCGuaguGGUGgAGGGCCCGCAGc- -3' miRNA: 3'- -CCACuGCuu--UUAC-UCCCGGGCGUUug -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 168551 | 0.77 | 0.685424 |
Target: 5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3' miRNA: 3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 44527 | 0.67 | 0.993164 |
Target: 5'- aGGcUGACGGGcggaggacGGUGGGGGgCUGCGgugGACu -3' miRNA: 3'- -CC-ACUGCUU--------UUACUCCCgGGCGU---UUG- -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 154674 | 0.67 | 0.990977 |
Target: 5'- uGGUGGCGggGGgcgcugcugcUGGGuGGUCUGCGc-- -3' miRNA: 3'- -CCACUGCuuUU----------ACUC-CCGGGCGUuug -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 89683 | 0.67 | 0.988272 |
Target: 5'- --cGACGGAA---GGGGCCCGgGGAa -3' miRNA: 3'- ccaCUGCUUUuacUCCCGGGCgUUUg -5' |
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28997 | 3' | -50.6 | NC_006146.1 | + | 56121 | 0.68 | 0.986703 |
Target: 5'- --aGGCGAAGGUGGccgcGGGCCC-CGAGa -3' miRNA: 3'- ccaCUGCUUUUACU----CCCGGGcGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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