miRNA display CGI


Results 41 - 60 of 127 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 155218 0.69 0.965842
Target:  5'- cGUGAUGAAGGUGuacaggcugugggucAGGGCgUGCAggUg -3'
miRNA:   3'- cCACUGCUUUUAC---------------UCCCGgGCGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 110378 0.77 0.653987
Target:  5'- aGGUGGCGAGAAUu-GGGCCCaGUggGAGCa -3'
miRNA:   3'- -CCACUGCUUUUAcuCCCGGG-CG--UUUG- -5'
28997 3' -50.6 NC_006146.1 + 99026 0.67 0.988272
Target:  5'- cGUGACGGccGUGuagaggccccccAGGGCCCgGCGggUg -3'
miRNA:   3'- cCACUGCUuuUAC------------UCCCGGG-CGUuuG- -5'
28997 3' -50.6 NC_006146.1 + 108149 0.78 0.632921
Target:  5'- gGGUGACGuucAUGuGGGUCCGCGGGg -3'
miRNA:   3'- -CCACUGCuuuUACuCCCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 132431 0.66 0.996269
Target:  5'- gGGUGugGAAAAa-GGGGCUgaaacaCGCGAGu -3'
miRNA:   3'- -CCACugCUUUUacUCCCGG------GCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 168551 0.77 0.685424
Target:  5'- cGGgGGCGGAGggGGGGGuCCCGCGGGg -3'
miRNA:   3'- -CCaCUGCUUUuaCUCCC-GGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 99070 0.76 0.706164
Target:  5'- cGGUGcCGuaguGGUGgAGGGCCCGCAGc- -3'
miRNA:   3'- -CCACuGCuu--UUAC-UCCCGGGCGUUug -5'
28997 3' -50.6 NC_006146.1 + 153385 0.66 0.996208
Target:  5'- uGGUGGcCGGAuuguUGAGGGugccaagggaguuCCCGgGGGCg -3'
miRNA:   3'- -CCACU-GCUUuu--ACUCCC-------------GGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 6158 0.66 0.99563
Target:  5'- ---aGCGAAAauaagGUGA-GGCCUGCGGACa -3'
miRNA:   3'- ccacUGCUUU-----UACUcCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 46862 0.66 0.994828
Target:  5'- uGGUaGACGggGAUGuaguugaGGGGCuccuggguguCCGaCGAGCg -3'
miRNA:   3'- -CCA-CUGCuuUUAC-------UCCCG----------GGC-GUUUG- -5'
28997 3' -50.6 NC_006146.1 + 39812 0.67 0.993546
Target:  5'- aGGUGugGAcuAGcgGGGGGUaggcuaccccuuccuCCGCGuuGGCg -3'
miRNA:   3'- -CCACugCU--UUuaCUCCCG---------------GGCGU--UUG- -5'
28997 3' -50.6 NC_006146.1 + 44527 0.67 0.993164
Target:  5'- aGGcUGACGGGcggaggacGGUGGGGGgCUGCGgugGACu -3'
miRNA:   3'- -CC-ACUGCUU--------UUACUCCCgGGCGU---UUG- -5'
28997 3' -50.6 NC_006146.1 + 154674 0.67 0.990977
Target:  5'- uGGUGGCGggGGgcgcugcugcUGGGuGGUCUGCGc-- -3'
miRNA:   3'- -CCACUGCuuUU----------ACUC-CCGGGCGUuug -5'
28997 3' -50.6 NC_006146.1 + 30734 1.12 0.006639
Target:  5'- gGGUGACGAAAAUGAGGGCCCGCAAACu -3'
miRNA:   3'- -CCACUGCUUUUACUCCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 167649 0.68 0.986703
Target:  5'- --cGGCGcguGccGGGGGCCCGgGGGCg -3'
miRNA:   3'- ccaCUGCuu-UuaCUCCCGGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 94769 0.68 0.983086
Target:  5'- -uUGAUGAA---GAGGGCCCaguuGCGGGCc -3'
miRNA:   3'- ccACUGCUUuuaCUCCCGGG----CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 52076 0.69 0.970846
Target:  5'- -aUGACGGGAGggcugcggucGGGGGCCgGCGAGg -3'
miRNA:   3'- ccACUGCUUUUa---------CUCCCGGgCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 47567 0.69 0.970846
Target:  5'- --cGGCGAGAccccUGAcGGCCCcGCAGACg -3'
miRNA:   3'- ccaCUGCUUUu---ACUcCCGGG-CGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 125576 0.7 0.960992
Target:  5'- gGGUGAC---AAUGGGaaCCCGCAGGCa -3'
miRNA:   3'- -CCACUGcuuUUACUCccGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 90528 0.71 0.928051
Target:  5'- uGGUGAUGAAcaaccucccggagcGGUGgagcAGGGCCCGgGAGa -3'
miRNA:   3'- -CCACUGCUU--------------UUAC----UCCCGGGCgUUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.