miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 3' -50.6 NC_006146.1 + 17340 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 4574 0.66 0.994086
Target:  5'- -aUGGCGucggccUGGGGaGCCCGCGGGg -3'
miRNA:   3'- ccACUGCuuuu--ACUCC-CGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 124189 0.66 0.994086
Target:  5'- gGGUGACGGAGAagggaGAGGagcacgugcugaGCCUGCucuuuGGCa -3'
miRNA:   3'- -CCACUGCUUUUa----CUCC------------CGGGCGu----UUG- -5'
28997 3' -50.6 NC_006146.1 + 15283 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 18361 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 24516 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 21438 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 27594 0.67 0.993164
Target:  5'- gGGUGugGuGGAGUGGuGGGCUgaGCGGAa -3'
miRNA:   3'- -CCACugC-UUUUACU-CCCGGg-CGUUUg -5'
28997 3' -50.6 NC_006146.1 + 14262 0.67 0.992131
Target:  5'- gGGUGGgGAguggccagggagGAcgGAGGGCCUgGCcuGCg -3'
miRNA:   3'- -CCACUgCU------------UUuaCUCCCGGG-CGuuUG- -5'
28997 3' -50.6 NC_006146.1 + 133435 0.66 0.994906
Target:  5'- uGGUGuuGAGGGUaGGGGGgCUGgGGGCa -3'
miRNA:   3'- -CCACugCUUUUA-CUCCCgGGCgUUUG- -5'
28997 3' -50.6 NC_006146.1 + 83857 0.66 0.994906
Target:  5'- gGGUGGCcaacccAAAGgugGAGgucuGGCCCGCAGAg -3'
miRNA:   3'- -CCACUGc-----UUUUa--CUC----CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 54351 0.66 0.995562
Target:  5'- aGGagGACGAGGAgGAGGGCaggggggCCGCuacuACu -3'
miRNA:   3'- -CCa-CUGCUUUUaCUCCCG-------GGCGuu--UG- -5'
28997 3' -50.6 NC_006146.1 + 76082 0.66 0.997317
Target:  5'- aGGUGcUGGAAuuacGGGaGCCCGCcGACa -3'
miRNA:   3'- -CCACuGCUUUuac-UCC-CGGGCGuUUG- -5'
28997 3' -50.6 NC_006146.1 + 160580 0.66 0.997317
Target:  5'- uGGUuuGCGAGAcUGGGcGGCCUGCcaaGGGCg -3'
miRNA:   3'- -CCAc-UGCUUUuACUC-CCGGGCG---UUUG- -5'
28997 3' -50.6 NC_006146.1 + 121491 0.66 0.997271
Target:  5'- uGGUGugGAAcacAAUcuguccaGAGGGCaggugcacggccCCGUGAACg -3'
miRNA:   3'- -CCACugCUU---UUA-------CUCCCG------------GGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 131216 0.66 0.996828
Target:  5'- aGGaGGCuGAGGcUGAGcGGCCUGCGGGg -3'
miRNA:   3'- -CCaCUG-CUUUuACUC-CCGGGCGUUUg -5'
28997 3' -50.6 NC_006146.1 + 43654 0.66 0.996668
Target:  5'- --cGAgGAGGcugccgcuccagauGUGGcGGCCCGCAGGCu -3'
miRNA:   3'- ccaCUgCUUU--------------UACUcCCGGGCGUUUG- -5'
28997 3' -50.6 NC_006146.1 + 46574 0.66 0.996269
Target:  5'- -cUGGCGAGGGacGGGGGCCUGgGGGa -3'
miRNA:   3'- ccACUGCUUUUa-CUCCCGGGCgUUUg -5'
28997 3' -50.6 NC_006146.1 + 127892 0.66 0.996269
Target:  5'- gGGaGGCGggGAUG-GGGCgCUGCu--- -3'
miRNA:   3'- -CCaCUGCuuUUACuCCCG-GGCGuuug -5'
28997 3' -50.6 NC_006146.1 + 163169 0.66 0.996269
Target:  5'- aGGggGAccCGGGAAaGGGGcGCCCGCcAACu -3'
miRNA:   3'- -CCa-CU--GCUUUUaCUCC-CGGGCGuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.