miRNA display CGI


Results 1 - 20 of 555 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 129607 0.65 0.668277
Target:  5'- -aGCCCCUGCCccucaccguggagcACCuACCUgaCGCC-CCg -3'
miRNA:   3'- cgUGGGGGCGG--------------UGG-UGGAg-GCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 90187 0.66 0.66158
Target:  5'- cCACUCCUGCucCACCACCUCCuCUugaguuCCc -3'
miRNA:   3'- cGUGGGGGCG--GUGGUGGAGGcGGu-----GG- -5'
28997 5' -63.2 NC_006146.1 + 45275 0.66 0.66158
Target:  5'- --gUCCCCGCuCACCAgCCcaugCC-CCACCc -3'
miRNA:   3'- cguGGGGGCG-GUGGU-GGa---GGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 21575 0.66 0.66158
Target:  5'- aGUcCCCUCGCCccuggGCCucaggcCCUCCGCguCCc -3'
miRNA:   3'- -CGuGGGGGCGG-----UGGu-----GGAGGCGguGG- -5'
28997 5' -63.2 NC_006146.1 + 18497 0.66 0.66158
Target:  5'- aGUcCCCUCGCCccuggGCCucaggcCCUCCGCguCCc -3'
miRNA:   3'- -CGuGGGGGCGG-----UGGu-----GGAGGCGguGG- -5'
28997 5' -63.2 NC_006146.1 + 15419 0.66 0.66158
Target:  5'- aGUcCCCUCGCCccuggGCCucaggcCCUCCGCguCCc -3'
miRNA:   3'- -CGuGGGGGCGG-----UGGu-----GGAGGCGguGG- -5'
28997 5' -63.2 NC_006146.1 + 12340 0.66 0.66158
Target:  5'- aGUcCCCUCGCCccuggGCCucaggcCCUCCGCguCCc -3'
miRNA:   3'- -CGuGGGGGCGG-----UGGu-----GGAGGCGguGG- -5'
28997 5' -63.2 NC_006146.1 + 27731 0.66 0.66158
Target:  5'- aGUcCCCUCGCCccuggGCCucaggcCCUCCGCguCCc -3'
miRNA:   3'- -CGuGGGGGCGG-----UGGu-----GGAGGCGguGG- -5'
28997 5' -63.2 NC_006146.1 + 148984 0.66 0.66158
Target:  5'- -gGCCUCUGCCAgCuuCC-CCGCC-CCu -3'
miRNA:   3'- cgUGGGGGCGGUgGu-GGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 146928 0.66 0.66158
Target:  5'- uCGCCCCCuCU-CCGgCUCCcCCACCc -3'
miRNA:   3'- cGUGGGGGcGGuGGUgGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 166896 0.66 0.66158
Target:  5'- aCACCCCCcucCCAUUGCC-CCGUCuCCc -3'
miRNA:   3'- cGUGGGGGc--GGUGGUGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 80288 0.66 0.66158
Target:  5'- aGCACCCaguuCGCCACCcagGCgCUgUGCUgggACCg -3'
miRNA:   3'- -CGUGGGg---GCGGUGG---UG-GAgGCGG---UGG- -5'
28997 5' -63.2 NC_006146.1 + 120132 0.66 0.66158
Target:  5'- -gACCUCCGgCAgCAgCgCCGCUGCCa -3'
miRNA:   3'- cgUGGGGGCgGUgGUgGaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 24653 0.66 0.66158
Target:  5'- aGUcCCCUCGCCccuggGCCucaggcCCUCCGCguCCc -3'
miRNA:   3'- -CGuGGGGGCGG-----UGGu-----GGAGGCGguGG- -5'
28997 5' -63.2 NC_006146.1 + 78076 0.66 0.660622
Target:  5'- uUACCCCCugguaccGCaGCCcCCUuuGCCACa -3'
miRNA:   3'- cGUGGGGG-------CGgUGGuGGAggCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 58985 0.66 0.651996
Target:  5'- ----aCCCGCCcacaaaACUugcCCUCCGUCACCa -3'
miRNA:   3'- cguggGGGCGG------UGGu--GGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 43050 0.66 0.651996
Target:  5'- aGCugCCugaCCGUCACC-CC-CCGCaagACCa -3'
miRNA:   3'- -CGugGG---GGCGGUGGuGGaGGCGg--UGG- -5'
28997 5' -63.2 NC_006146.1 + 160500 0.66 0.651996
Target:  5'- aCACCaCCGUguagcacagCACCACCcugagCCGCgACCa -3'
miRNA:   3'- cGUGGgGGCG---------GUGGUGGa----GGCGgUGG- -5'
28997 5' -63.2 NC_006146.1 + 100364 0.66 0.651996
Target:  5'- aUACCCCa-CCACCGcCCUCCGaCCu-- -3'
miRNA:   3'- cGUGGGGgcGGUGGU-GGAGGC-GGugg -5'
28997 5' -63.2 NC_006146.1 + 67511 0.66 0.651996
Target:  5'- aCGCCCCCcacuggcaggcGCC-CUAUCUCCcCCACg -3'
miRNA:   3'- cGUGGGGG-----------CGGuGGUGGAGGcGGUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.