miRNA display CGI


Results 1 - 20 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 129607 0.65 0.668277
Target:  5'- -aGCCCCUGCCccucaccguggagcACCuACCUgaCGCC-CCg -3'
miRNA:   3'- cgUGGGGGCGG--------------UGG-UGGAg-GCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 30545 0.66 0.642398
Target:  5'- gGCACCCCaauuCGUCAUagg--CUGCCACCg -3'
miRNA:   3'- -CGUGGGG----GCGGUGguggaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 64695 0.66 0.642398
Target:  5'- uCACCUgUGCCACgG--UCCGCCACa -3'
miRNA:   3'- cGUGGGgGCGGUGgUggAGGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 80237 0.66 0.642398
Target:  5'- gGCACCgCUGUCugGCCGCCaUCauaaaGCaCACCa -3'
miRNA:   3'- -CGUGGgGGCGG--UGGUGG-AGg----CG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 118435 0.66 0.642398
Target:  5'- -gGCCCCCaguacgugcgcaGCCGCCucuCCgagauggUCGCUGCCg -3'
miRNA:   3'- cgUGGGGG------------CGGUGGu--GGa------GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 132445 0.66 0.642398
Target:  5'- --uCCCCUGCUGCCuuUCUCUGCUGCg -3'
miRNA:   3'- cguGGGGGCGGUGGu-GGAGGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 14048 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 17126 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 20204 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 155753 0.66 0.642398
Target:  5'- gGCGCCCCgCGCgAgcCCGgCUCCaaCGCCc -3'
miRNA:   3'- -CGUGGGG-GCGgU--GGUgGAGGcgGUGG- -5'
28997 5' -63.2 NC_006146.1 + 83821 0.66 0.642398
Target:  5'- -aGCCCCCGCCACCAauugaCUUUaacaagacaGCCGa- -3'
miRNA:   3'- cgUGGGGGCGGUGGUg----GAGG---------CGGUgg -5'
28997 5' -63.2 NC_006146.1 + 155985 0.66 0.651036
Target:  5'- -gGCCCCCaggGCCACCGagcggcuCUUCUGCgGCg -3'
miRNA:   3'- cgUGGGGG---CGGUGGU-------GGAGGCGgUGg -5'
28997 5' -63.2 NC_006146.1 + 166896 0.66 0.66158
Target:  5'- aCACCCCCcucCCAUUGCC-CCGUCuCCc -3'
miRNA:   3'- cGUGGGGGc--GGUGGUGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 80288 0.66 0.66158
Target:  5'- aGCACCCaguuCGCCACCcagGCgCUgUGCUgggACCg -3'
miRNA:   3'- -CGUGGGg---GCGGUGG---UG-GAgGCGG---UGG- -5'
28997 5' -63.2 NC_006146.1 + 120132 0.66 0.66158
Target:  5'- -gACCUCCGgCAgCAgCgCCGCUGCCa -3'
miRNA:   3'- cgUGGGGGCgGUgGUgGaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 51041 0.66 0.651996
Target:  5'- uCAUCCCCcaccaGCCuggacACCGCCaggagCCGCUACUa -3'
miRNA:   3'- cGUGGGGG-----CGG-----UGGUGGa----GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 58985 0.66 0.651996
Target:  5'- ----aCCCGCCcacaaaACUugcCCUCCGUCACCa -3'
miRNA:   3'- cguggGGGCGG------UGGu--GGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 43050 0.66 0.651996
Target:  5'- aGCugCCugaCCGUCACC-CC-CCGCaagACCa -3'
miRNA:   3'- -CGugGG---GGCGGUGGuGGaGGCGg--UGG- -5'
28997 5' -63.2 NC_006146.1 + 166954 0.66 0.651036
Target:  5'- uGguCCCCuCGCCACUGCUggucccgUCCGaaACCc -3'
miRNA:   3'- -CguGGGG-GCGGUGGUGG-------AGGCggUGG- -5'
28997 5' -63.2 NC_006146.1 + 95497 0.66 0.651036
Target:  5'- cGCGCCUaCUGCC-CCACCgucuacagcgCCuucggguucaagaGCCGCCa -3'
miRNA:   3'- -CGUGGG-GGCGGuGGUGGa---------GG-------------CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.