Results 21 - 40 of 555 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28997 | 5' | -63.2 | NC_006146.1 | + | 23282 | 0.66 | 0.642398 |
Target: 5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3' miRNA: 3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 20204 | 0.66 | 0.642398 |
Target: 5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3' miRNA: 3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 95497 | 0.66 | 0.651036 |
Target: 5'- cGCGCCUaCUGCC-CCACCgucuacagcgCCuucggguucaagaGCCGCCa -3' miRNA: 3'- -CGUGGG-GGCGGuGGUGGa---------GG-------------CGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 166954 | 0.66 | 0.651036 |
Target: 5'- uGguCCCCuCGCCACUGCUggucccgUCCGaaACCc -3' miRNA: 3'- -CguGGGG-GCGGUGGUGG-------AGGCggUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 43050 | 0.66 | 0.651996 |
Target: 5'- aGCugCCugaCCGUCACC-CC-CCGCaagACCa -3' miRNA: 3'- -CGugGG---GGCGGUGGuGGaGGCGg--UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 58985 | 0.66 | 0.651996 |
Target: 5'- ----aCCCGCCcacaaaACUugcCCUCCGUCACCa -3' miRNA: 3'- cguggGGGCGG------UGGu--GGAGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 51041 | 0.66 | 0.651996 |
Target: 5'- uCAUCCCCcaccaGCCuggacACCGCCaggagCCGCUACUa -3' miRNA: 3'- cGUGGGGG-----CGG-----UGGUGGa----GGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 120132 | 0.66 | 0.66158 |
Target: 5'- -gACCUCCGgCAgCAgCgCCGCUGCCa -3' miRNA: 3'- cgUGGGGGCgGUgGUgGaGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 80288 | 0.66 | 0.66158 |
Target: 5'- aGCACCCaguuCGCCACCcagGCgCUgUGCUgggACCg -3' miRNA: 3'- -CGUGGGg---GCGGUGG---UG-GAgGCGG---UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 166896 | 0.66 | 0.66158 |
Target: 5'- aCACCCCCcucCCAUUGCC-CCGUCuCCc -3' miRNA: 3'- cGUGGGGGc--GGUGGUGGaGGCGGuGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 155985 | 0.66 | 0.651036 |
Target: 5'- -gGCCCCCaggGCCACCGagcggcuCUUCUGCgGCg -3' miRNA: 3'- cgUGGGGG---CGGUGGU-------GGAGGCGgUGg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 83821 | 0.66 | 0.642398 |
Target: 5'- -aGCCCCCGCCACCAauugaCUUUaacaagacaGCCGa- -3' miRNA: 3'- cgUGGGGGCGGUGGUg----GAGG---------CGGUgg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 17126 | 0.66 | 0.642398 |
Target: 5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3' miRNA: 3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 14048 | 0.66 | 0.642398 |
Target: 5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3' miRNA: 3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 132445 | 0.66 | 0.642398 |
Target: 5'- --uCCCCUGCUGCCuuUCUCUGCUGCg -3' miRNA: 3'- cguGGGGGCGGUGGu-GGAGGCGGUGg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 118435 | 0.66 | 0.642398 |
Target: 5'- -gGCCCCCaguacgugcgcaGCCGCCucuCCgagauggUCGCUGCCg -3' miRNA: 3'- cgUGGGGG------------CGGUGGu--GGa------GGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 80237 | 0.66 | 0.642398 |
Target: 5'- gGCACCgCUGUCugGCCGCCaUCauaaaGCaCACCa -3' miRNA: 3'- -CGUGGgGGCGG--UGGUGG-AGg----CG-GUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 64695 | 0.66 | 0.642398 |
Target: 5'- uCACCUgUGCCACgG--UCCGCCACa -3' miRNA: 3'- cGUGGGgGCGGUGgUggAGGCGGUGg -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 30545 | 0.66 | 0.642398 |
Target: 5'- gGCACCCCaauuCGUCAUagg--CUGCCACCg -3' miRNA: 3'- -CGUGGGG----GCGGUGguggaGGCGGUGG- -5' |
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28997 | 5' | -63.2 | NC_006146.1 | + | 155753 | 0.66 | 0.642398 |
Target: 5'- gGCGCCCCgCGCgAgcCCGgCUCCaaCGCCc -3' miRNA: 3'- -CGUGGGG-GCGgU--GGUgGAGGcgGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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