miRNA display CGI


Results 1 - 20 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 30770 1.11 0.000602
Target:  5'- gGCACCCCCGCCACCACCUCCGCCACCc -3'
miRNA:   3'- -CGUGGGGGCGGUGGUGGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 99938 0.86 0.035698
Target:  5'- cGCACCCCCGCUcCCGCCUCCuCCGCa -3'
miRNA:   3'- -CGUGGGGGCGGuGGUGGAGGcGGUGg -5'
28997 5' -63.2 NC_006146.1 + 30795 0.84 0.051046
Target:  5'- --nCCCCUcuuCCACCACCUCCGCCACCc -3'
miRNA:   3'- cguGGGGGc--GGUGGUGGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 93073 0.83 0.056504
Target:  5'- --cCCCCCGCCGCCccCCUCCGCCGuCCu -3'
miRNA:   3'- cguGGGGGCGGUGGu-GGAGGCGGU-GG- -5'
28997 5' -63.2 NC_006146.1 + 122893 0.82 0.065767
Target:  5'- uGCcuCCCCCGCCAa-GCCUcCCGCCACCa -3'
miRNA:   3'- -CGu-GGGGGCGGUggUGGA-GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 47198 0.81 0.082454
Target:  5'- cCGCCCCgagCGCCaggccccugGCCGCCUCCGCCACg -3'
miRNA:   3'- cGUGGGG---GCGG---------UGGUGGAGGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 114644 0.81 0.082454
Target:  5'- uCGCuCCCCGCCGaggacggccCCGCCUCCGCCcCCg -3'
miRNA:   3'- cGUG-GGGGCGGU---------GGUGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 159912 0.8 0.091106
Target:  5'- -gACCCCCGUCACCGgCagCGCCGCCu -3'
miRNA:   3'- cgUGGGGGCGGUGGUgGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 54959 0.8 0.103135
Target:  5'- gGCgACCgCCGCCGCCGCUaCCGCUGCCc -3'
miRNA:   3'- -CG-UGGgGGCGGUGGUGGaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 114048 0.8 0.103135
Target:  5'- -aGCCCCagccaaaGCUGCCGCCcCCGCCGCCa -3'
miRNA:   3'- cgUGGGGg------CGGUGGUGGaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 76975 0.79 0.105714
Target:  5'- cGgAgCCCCGCCGCCGCCUUCuaCGCCu -3'
miRNA:   3'- -CgUgGGGGCGGUGGUGGAGGcgGUGG- -5'
28997 5' -63.2 NC_006146.1 + 69028 0.79 0.105714
Target:  5'- -gAUUCCCGCCACCGuCCUcgccCCGCCACCc -3'
miRNA:   3'- cgUGGGGGCGGUGGU-GGA----GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 156874 0.79 0.105714
Target:  5'- -uGCCCCCGCCugCucccugcCCUCCGCCuuCCa -3'
miRNA:   3'- cgUGGGGGCGGugGu------GGAGGCGGu-GG- -5'
28997 5' -63.2 NC_006146.1 + 126368 0.79 0.108354
Target:  5'- cGCAgCCCC-CCACCGuCCUCCGCCcgucaGCCu -3'
miRNA:   3'- -CGUgGGGGcGGUGGU-GGAGGCGG-----UGG- -5'
28997 5' -63.2 NC_006146.1 + 129420 0.79 0.111055
Target:  5'- cGCACCCCaagGCCcagcaacaucACCGCCgCUGCCACCg -3'
miRNA:   3'- -CGUGGGGg--CGG----------UGGUGGaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 109036 0.79 0.119542
Target:  5'- cGCGCCCCCGUgGagACCUCUGCC-CCg -3'
miRNA:   3'- -CGUGGGGGCGgUggUGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 113880 0.78 0.125532
Target:  5'- cGCACuCCaCCGCCACCuccuCCUCgGCCAUg -3'
miRNA:   3'- -CGUG-GG-GGCGGUGGu---GGAGgCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 126049 0.78 0.127693
Target:  5'- aGCGgggaCCCGCCAucuauaaccuacacCCACCUCCGUCACCa -3'
miRNA:   3'- -CGUgg--GGGCGGU--------------GGUGGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 127533 0.78 0.12863
Target:  5'- uGCuGCCCCCGCUaaGCCACCccCUGCCACg -3'
miRNA:   3'- -CG-UGGGGGCGG--UGGUGGa-GGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 159457 0.78 0.131798
Target:  5'- -aACUCCUugaggGCCGCCACCUUgGCCACCu -3'
miRNA:   3'- cgUGGGGG-----CGGUGGUGGAGgCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.