miRNA display CGI


Results 21 - 40 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 80256 0.78 0.138352
Target:  5'- cCACCCUCGCCGCggCGCCUCCcaaaCCACCc -3'
miRNA:   3'- cGUGGGGGCGGUG--GUGGAGGc---GGUGG- -5'
28997 5' -63.2 NC_006146.1 + 92974 0.78 0.14174
Target:  5'- aGCgACCCCCGgCACCugCgaggCCGcCCGCCc -3'
miRNA:   3'- -CG-UGGGGGCgGUGGugGa---GGC-GGUGG- -5'
28997 5' -63.2 NC_006146.1 + 30828 0.77 0.148744
Target:  5'- cCACCCCCuCCACCacccccuguucaACCUCCuCCACCa -3'
miRNA:   3'- cGUGGGGGcGGUGG------------UGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 48516 0.77 0.148744
Target:  5'- aGCACCUCCgcguuccugGCCGCCGCaUCCGCCuucGCCg -3'
miRNA:   3'- -CGUGGGGG---------CGGUGGUGgAGGCGG---UGG- -5'
28997 5' -63.2 NC_006146.1 + 126882 0.77 0.163705
Target:  5'- -gGCCCUCgGCCGCCcCCUCC-CCGCCg -3'
miRNA:   3'- cgUGGGGG-CGGUGGuGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 113540 0.77 0.163705
Target:  5'- gGCGCCaCCGCCGCaGCCUCCcUCACCg -3'
miRNA:   3'- -CGUGGgGGCGGUGgUGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 380 0.76 0.167651
Target:  5'- cGCGCCCCCucagGCC-CCGCCcgCCGCgCGCUg -3'
miRNA:   3'- -CGUGGGGG----CGGuGGUGGa-GGCG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 138008 0.76 0.167651
Target:  5'- uGCGCCCCCaGCCggacccugguGCCaggcagggACCUCgCGCCGCCc -3'
miRNA:   3'- -CGUGGGGG-CGG----------UGG--------UGGAG-GCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 9135 0.76 0.167651
Target:  5'- -gGCCCCCGCCcaggcGCCcCCUcggaccucagCCGCCACCc -3'
miRNA:   3'- cgUGGGGGCGG-----UGGuGGA----------GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 34178 0.76 0.167651
Target:  5'- uGCGCCCCCaGCCggacccugguGCCaggcagggACCUCgCGCCGCCc -3'
miRNA:   3'- -CGUGGGGG-CGG----------UGG--------UGGAG-GCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 128356 0.76 0.171682
Target:  5'- aGCGCCCCC-CCACC-CC-CCGUCugCu -3'
miRNA:   3'- -CGUGGGGGcGGUGGuGGaGGCGGugG- -5'
28997 5' -63.2 NC_006146.1 + 92936 0.76 0.171682
Target:  5'- gGCACCUCCaagGCCACCGgCUCCgGCCcagACCa -3'
miRNA:   3'- -CGUGGGGG---CGGUGGUgGAGG-CGG---UGG- -5'
28997 5' -63.2 NC_006146.1 + 129309 0.76 0.184299
Target:  5'- aGC-CCCCCggGCCucuCCGCCUCgGCCAgCCa -3'
miRNA:   3'- -CGuGGGGG--CGGu--GGUGGAGgCGGU-GG- -5'
28997 5' -63.2 NC_006146.1 + 16224 0.76 0.184299
Target:  5'- cCACCCagcaGCCAgCGCCccCCGCCACCa -3'
miRNA:   3'- cGUGGGgg--CGGUgGUGGa-GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 125734 0.76 0.184299
Target:  5'- aGCGCCgCCGCCGauCCgagGCCUCCGucCCACCc -3'
miRNA:   3'- -CGUGGgGGCGGU--GG---UGGAGGC--GGUGG- -5'
28997 5' -63.2 NC_006146.1 + 14963 0.76 0.188684
Target:  5'- cCACcuCCCCGUCAUCGCCggcUCCGCCAUCc -3'
miRNA:   3'- cGUG--GGGGCGGUGGUGG---AGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 60014 0.76 0.188684
Target:  5'- cGCGgCCCCGUCcCCGCCUgCGCCcgaGCCc -3'
miRNA:   3'- -CGUgGGGGCGGuGGUGGAgGCGG---UGG- -5'
28997 5' -63.2 NC_006146.1 + 117906 0.76 0.188684
Target:  5'- -gACCCCCGCgGCCACggccggcaggUCCGCCugCg -3'
miRNA:   3'- cgUGGGGGCGgUGGUGg---------AGGCGGugG- -5'
28997 5' -63.2 NC_006146.1 + 79721 0.75 0.191807
Target:  5'- cCugCCCCGCCGCacccucaucuccuuCAUUUCCGUCACCu -3'
miRNA:   3'- cGugGGGGCGGUG--------------GUGGAGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 18029 0.75 0.192708
Target:  5'- uGCGCCCggggccaccuccaCCGUCAUCGCCggcUCCGCCAUCc -3'
miRNA:   3'- -CGUGGG-------------GGCGGUGGUGG---AGGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.