miRNA display CGI


Results 21 - 40 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 51041 0.66 0.651996
Target:  5'- uCAUCCCCcaccaGCCuggacACCGCCaggagCCGCUACUa -3'
miRNA:   3'- cGUGGGGG-----CGG-----UGGUGGa----GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 43050 0.66 0.651996
Target:  5'- aGCugCCugaCCGUCACC-CC-CCGCaagACCa -3'
miRNA:   3'- -CGugGG---GGCGGUGGuGGaGGCGg--UGG- -5'
28997 5' -63.2 NC_006146.1 + 153195 0.66 0.651036
Target:  5'- aCGuCCCCCaggcgcuugGCCGCCACgggCCGCCcguagauGCCg -3'
miRNA:   3'- cGU-GGGGG---------CGGUGGUGga-GGCGG-------UGG- -5'
28997 5' -63.2 NC_006146.1 + 155578 0.66 0.651036
Target:  5'- gGCGCCCgCCagggGCaCACCggggcugGCCUCCgGCC-CCu -3'
miRNA:   3'- -CGUGGG-GG----CG-GUGG-------UGGAGG-CGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 166954 0.66 0.651036
Target:  5'- uGguCCCCuCGCCACUGCUggucccgUCCGaaACCc -3'
miRNA:   3'- -CguGGGG-GCGGUGGUGG-------AGGCggUGG- -5'
28997 5' -63.2 NC_006146.1 + 95497 0.66 0.651036
Target:  5'- cGCGCCUaCUGCC-CCACCgucuacagcgCCuucggguucaagaGCCGCCa -3'
miRNA:   3'- -CGUGGG-GGCGGuGGUGGa---------GG-------------CGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 155985 0.66 0.651036
Target:  5'- -gGCCCCCaggGCCACCGagcggcuCUUCUGCgGCg -3'
miRNA:   3'- cgUGGGGG---CGGUGGU-------GGAGGCGgUGg -5'
28997 5' -63.2 NC_006146.1 + 30545 0.66 0.642398
Target:  5'- gGCACCCCaauuCGUCAUagg--CUGCCACCg -3'
miRNA:   3'- -CGUGGGG----GCGGUGguggaGGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 26360 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 165106 0.66 0.642398
Target:  5'- -uGCCUCCGUCuCCuucauuGCCUCCauuuCCACCg -3'
miRNA:   3'- cgUGGGGGCGGuGG------UGGAGGc---GGUGG- -5'
28997 5' -63.2 NC_006146.1 + 126895 0.66 0.642398
Target:  5'- -gACCCUCcCCAcauCCACCUCCgGCCuACUc -3'
miRNA:   3'- cgUGGGGGcGGU---GGUGGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 164791 0.66 0.642398
Target:  5'- --cCCCaCCGCCuCCACCgUUGCCuCCa -3'
miRNA:   3'- cguGGG-GGCGGuGGUGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 29437 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 17126 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 80237 0.66 0.642398
Target:  5'- gGCACCgCUGUCugGCCGCCaUCauaaaGCaCACCa -3'
miRNA:   3'- -CGUGGgGGCGG--UGGUGG-AGg----CG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 47381 0.66 0.642398
Target:  5'- -uGCCaCCCGCgAcCCGCCUggggucgaCCGUgGCCa -3'
miRNA:   3'- cgUGG-GGGCGgU-GGUGGA--------GGCGgUGG- -5'
28997 5' -63.2 NC_006146.1 + 23282 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 64695 0.66 0.642398
Target:  5'- uCACCUgUGCCACgG--UCCGCCACa -3'
miRNA:   3'- cGUGGGgGCGGUGgUggAGGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 83821 0.66 0.642398
Target:  5'- -aGCCCCCGCCACCAauugaCUUUaacaagacaGCCGa- -3'
miRNA:   3'- cgUGGGGGCGGUGGUg----GAGG---------CGGUgg -5'
28997 5' -63.2 NC_006146.1 + 155753 0.66 0.642398
Target:  5'- gGCGCCCCgCGCgAgcCCGgCUCCaaCGCCc -3'
miRNA:   3'- -CGUGGGG-GCGgU--GGUgGAGGcgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.