miRNA display CGI


Results 41 - 60 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 165106 0.66 0.642398
Target:  5'- -uGCCUCCGUCuCCuucauuGCCUCCauuuCCACCg -3'
miRNA:   3'- cgUGGGGGCGGuGG------UGGAGGc---GGUGG- -5'
28997 5' -63.2 NC_006146.1 + 132445 0.66 0.642398
Target:  5'- --uCCCCUGCUGCCuuUCUCUGCUGCg -3'
miRNA:   3'- cguGGGGGCGGUGGu-GGAGGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 17126 0.66 0.642398
Target:  5'- gGCACaCCggGCCGCCGgggucCCUCCgGCCgGCCu -3'
miRNA:   3'- -CGUG-GGggCGGUGGU-----GGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 118435 0.66 0.642398
Target:  5'- -gGCCCCCaguacgugcgcaGCCGCCucuCCgagauggUCGCUGCCg -3'
miRNA:   3'- cgUGGGGG------------CGGUGGu--GGa------GGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 80237 0.66 0.642398
Target:  5'- gGCACCgCUGUCugGCCGCCaUCauaaaGCaCACCa -3'
miRNA:   3'- -CGUGGgGGCGG--UGGUGG-AGg----CG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 164791 0.66 0.642398
Target:  5'- --cCCCaCCGCCuCCACCgUUGCCuCCa -3'
miRNA:   3'- cguGGG-GGCGGuGGUGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 32923 0.66 0.641437
Target:  5'- uGCACCCCagcauugaCGCCGCuCGuuUCCaaaucuuGUCGCCa -3'
miRNA:   3'- -CGUGGGG--------GCGGUG-GUggAGG-------CGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 102518 0.66 0.632793
Target:  5'- aGCACCacgggaGUCACCAgCaCCGCCACg -3'
miRNA:   3'- -CGUGGggg---CGGUGGUgGaGGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 114325 0.66 0.632793
Target:  5'- cGCAUCCCCaGgCGCCugCaUCa-CCACCc -3'
miRNA:   3'- -CGUGGGGG-CgGUGGugG-AGgcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 157753 0.66 0.632793
Target:  5'- cGCGgCCUacgcggagGCCACCuCCUCCcUCACCg -3'
miRNA:   3'- -CGUgGGGg-------CGGUGGuGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 41383 0.66 0.631832
Target:  5'- gGCGCCUCacgaGUUccuucuuccacggGCCGCCUCCGaCC-CCg -3'
miRNA:   3'- -CGUGGGGg---CGG-------------UGGUGGAGGC-GGuGG- -5'
28997 5' -63.2 NC_006146.1 + 116289 0.66 0.62895
Target:  5'- -gACCCUCgggugGCCGCCACCaugcaccaggacgUCGCCACa -3'
miRNA:   3'- cgUGGGGG-----CGGUGGUGGa------------GGCGGUGg -5'
28997 5' -63.2 NC_006146.1 + 49710 0.66 0.627029
Target:  5'- -aGCCCCCGgaUCAcCCGCCgauccagaugccaCGCCGCCc -3'
miRNA:   3'- cgUGGGGGC--GGU-GGUGGag-----------GCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 20235 0.66 0.623187
Target:  5'- nCACUCCC--CACC-CCUCCccgGCCACCc -3'
miRNA:   3'- cGUGGGGGcgGUGGuGGAGG---CGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 29469 0.66 0.623187
Target:  5'- nCACUCCC--CACC-CCUCCccgGCCACCc -3'
miRNA:   3'- cGUGGGGGcgGUGGuGGAGG---CGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 33350 0.66 0.623187
Target:  5'- gGUGCCCa-GCCggGCCACC-CC-CCACCc -3'
miRNA:   3'- -CGUGGGggCGG--UGGUGGaGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 32796 0.66 0.623187
Target:  5'- cUAUCCCCGCagCACCuCCUUgGCUGCUu -3'
miRNA:   3'- cGUGGGGGCG--GUGGuGGAGgCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 105825 0.66 0.623187
Target:  5'- aGgGCCCCUcCUGCC-CCg-CGCCGCCg -3'
miRNA:   3'- -CgUGGGGGcGGUGGuGGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 33473 0.66 0.623187
Target:  5'- gGUGCCCa-GCCggGCCACC-CC-CCACCc -3'
miRNA:   3'- -CGUGGGggCGG--UGGUGGaGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 59149 0.66 0.623187
Target:  5'- uCGCUggCCCGCCucagggacGCCACCcagUgUGCCACCu -3'
miRNA:   3'- cGUGG--GGGCGG--------UGGUGG---AgGCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.