miRNA display CGI


Results 1 - 20 of 555 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 211 0.69 0.445465
Target:  5'- gGUGCCCCCGCgacgguccccggggCGCCccugGCCUCCcCCGCg -3'
miRNA:   3'- -CGUGGGGGCG--------------GUGG----UGGAGGcGGUGg -5'
28997 5' -63.2 NC_006146.1 + 380 0.76 0.167651
Target:  5'- cGCGCCCCCucagGCC-CCGCCcgCCGCgCGCUg -3'
miRNA:   3'- -CGUGGGGG----CGGuGGUGGa-GGCG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 425 0.7 0.405577
Target:  5'- aGC-CCCCCGCuCGCC-CCUCgggucgcgggacaCGCCcCCg -3'
miRNA:   3'- -CGuGGGGGCG-GUGGuGGAG-------------GCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 477 0.7 0.422753
Target:  5'- cGCGCcgggCCCCGCgGgacccCCcCCUCCGCCcCCg -3'
miRNA:   3'- -CGUG----GGGGCGgU-----GGuGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 604 0.69 0.48299
Target:  5'- gGCGCcagCCCUGCC-CCcUCUCCcCCGCCa -3'
miRNA:   3'- -CGUG---GGGGCGGuGGuGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 667 0.72 0.323833
Target:  5'- aGCAUgCCCGCCcgACC-CC-CCGCC-CCg -3'
miRNA:   3'- -CGUGgGGGCGG--UGGuGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 706 0.71 0.337871
Target:  5'- -gGCCCCCGCCagGCCccgGCC-CCGCCcUCg -3'
miRNA:   3'- cgUGGGGGCGG--UGG---UGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 738 0.7 0.414519
Target:  5'- -aGCCCCCucaGCCcCCgGCCggCGCCGCCg -3'
miRNA:   3'- cgUGGGGG---CGGuGG-UGGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 804 0.68 0.528436
Target:  5'- -gGCCCCCccugcggcGCCgGCC-CCUCCcGCCgGCCa -3'
miRNA:   3'- cgUGGGGG--------CGG-UGGuGGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 1142 0.69 0.456641
Target:  5'- gGUGCCCCCGCgAggguCC-CCgggCCGCC-CCg -3'
miRNA:   3'- -CGUGGGGGCGgU----GGuGGa--GGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 1242 0.71 0.352347
Target:  5'- cGCGCgCCCGCCAcgcCCAgcugucauUCUCC-CCGCCa -3'
miRNA:   3'- -CGUGgGGGCGGU---GGU--------GGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 1311 0.7 0.398352
Target:  5'- cGCGCCCCCucagGCC-CCACCcgaCGCgCGCUc -3'
miRNA:   3'- -CGUGGGGG----CGGuGGUGGag-GCG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 1356 0.7 0.405577
Target:  5'- aGC-CCCCCGCuCGCC-CCUCgggucgcgggacaCGCCcCCg -3'
miRNA:   3'- -CGuGGGGGCG-GUGGuGGAG-------------GCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 1408 0.7 0.422753
Target:  5'- cGCGCcgggCCCCGCgGgacccCCcCCUCCGCCcCCg -3'
miRNA:   3'- -CGUG----GGGGCGgU-----GGuGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 1535 0.69 0.48299
Target:  5'- gGCGCcagCCCUGCC-CCcUCUCCcCCGCCa -3'
miRNA:   3'- -CGUG---GGGGCGGuGGuGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 1598 0.72 0.323833
Target:  5'- aGCAUgCCCGCCcgACC-CC-CCGCC-CCg -3'
miRNA:   3'- -CGUGgGGGCGG--UGGuGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 1637 0.71 0.337871
Target:  5'- -gGCCCCCGCCagGCCccgGCC-CCGCCcUCg -3'
miRNA:   3'- cgUGGGGGCGG--UGG---UGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 1669 0.7 0.414519
Target:  5'- -aGCCCCCucaGCCcCCgGCCggCGCCGCCg -3'
miRNA:   3'- cgUGGGGG---CGGuGG-UGGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 1735 0.68 0.537722
Target:  5'- -gGCCCCCccugcaggcGCCgGCC-CCUCCcGCCgGCCa -3'
miRNA:   3'- cgUGGGGG---------CGG-UGGuGGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 2074 0.69 0.456641
Target:  5'- gGUGCCCCCGCgAggguCC-CCgggCCGCC-CCg -3'
miRNA:   3'- -CGUGGGGGCGgU----GGuGGa--GGCGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.