miRNA display CGI


Results 21 - 40 of 555 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28997 5' -63.2 NC_006146.1 + 2174 0.71 0.352347
Target:  5'- cGCGCgCCCGCCAcgcCCAgcugucauUCUCC-CCGCCa -3'
miRNA:   3'- -CGUGgGGGCGGU---GGU--------GGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 2243 0.7 0.398352
Target:  5'- cGCGCCCCCucagGCC-CCACCcgaCGCgCGCUc -3'
miRNA:   3'- -CGUGGGGG----CGGuGGUGGag-GCG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 2288 0.7 0.405577
Target:  5'- aGC-CCCCCGCuCGCC-CCUCgggucgcgggacaCGCCcCCg -3'
miRNA:   3'- -CGuGGGGGCG-GUGGuGGAG-------------GCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 2340 0.7 0.422753
Target:  5'- cGCGCcgggCCCCGCgGgacccCCcCCUCCGCCcCCg -3'
miRNA:   3'- -CGUG----GGGGCGgU-----GGuGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 2467 0.69 0.48299
Target:  5'- gGCGCcagCCCUGCC-CCcUCUCCcCCGCCa -3'
miRNA:   3'- -CGUG---GGGGCGGuGGuGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 2530 0.72 0.323833
Target:  5'- aGCAUgCCCGCCcgACC-CC-CCGCC-CCg -3'
miRNA:   3'- -CGUGgGGGCGG--UGGuGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 2569 0.71 0.337871
Target:  5'- -gGCCCCCGCCagGCCccgGCC-CCGCCcUCg -3'
miRNA:   3'- cgUGGGGGCGG--UGG---UGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 2601 0.7 0.414519
Target:  5'- -aGCCCCCucaGCCcCCgGCCggCGCCGCCg -3'
miRNA:   3'- cgUGGGGG---CGGuGG-UGGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 2667 0.68 0.537722
Target:  5'- -gGCCCCCccugcaggcGCCgGCC-CCUCCcGCCgGCCa -3'
miRNA:   3'- cgUGGGGG---------CGG-UGGuGGAGG-CGG-UGG- -5'
28997 5' -63.2 NC_006146.1 + 3006 0.69 0.456641
Target:  5'- gGUGCCCCCGCgAggguCC-CCgggCCGCC-CCg -3'
miRNA:   3'- -CGUGGGGGCGgU----GGuGGa--GGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 3106 0.71 0.352347
Target:  5'- cGCGCgCCCGCCAcgcCCAgcugucauUCUCC-CCGCCa -3'
miRNA:   3'- -CGUGgGGGCGGU---GGU--------GGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 3175 0.7 0.398352
Target:  5'- cGCGCCCCCucagGCC-CCACCcgaCGCgCGCUc -3'
miRNA:   3'- -CGUGGGGG----CGGuGGUGGag-GCG-GUGG- -5'
28997 5' -63.2 NC_006146.1 + 3220 0.7 0.405577
Target:  5'- aGC-CCCCCGCuCGCC-CCUCgggucgcgggacaCGCCcCCg -3'
miRNA:   3'- -CGuGGGGGCG-GUGGuGGAG-------------GCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 3272 0.7 0.422753
Target:  5'- cGCGCcgggCCCCGCgGgacccCCcCCUCCGCCcCCg -3'
miRNA:   3'- -CGUG----GGGGCGgU-----GGuGGAGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 3399 0.69 0.48299
Target:  5'- gGCGCcagCCCUGCC-CCcUCUCCcCCGCCa -3'
miRNA:   3'- -CGUG---GGGGCGGuGGuGGAGGcGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 3462 0.72 0.323833
Target:  5'- aGCAUgCCCGCCcgACC-CC-CCGCC-CCg -3'
miRNA:   3'- -CGUGgGGGCGG--UGGuGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 3501 0.71 0.337871
Target:  5'- -gGCCCCCGCCagGCCccgGCC-CCGCCcUCg -3'
miRNA:   3'- cgUGGGGGCGG--UGG---UGGaGGCGGuGG- -5'
28997 5' -63.2 NC_006146.1 + 3533 0.7 0.414519
Target:  5'- -aGCCCCCucaGCCcCCgGCCggCGCCGCCg -3'
miRNA:   3'- cgUGGGGG---CGGuGG-UGGagGCGGUGG- -5'
28997 5' -63.2 NC_006146.1 + 3836 0.69 0.439511
Target:  5'- gGCACCCCCGCUGCC-CUaCCGg-ACCu -3'
miRNA:   3'- -CGUGGGGGCGGUGGuGGaGGCggUGG- -5'
28997 5' -63.2 NC_006146.1 + 3922 0.68 0.519211
Target:  5'- cGCGCCCa-GCCACUGCC-CCGUC-CUc -3'
miRNA:   3'- -CGUGGGggCGGUGGUGGaGGCGGuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.